Variant report

Variant	rs13214079
Chromosome Location	chr6:132385367-132385368
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	6:132269655-132282174..6:132384441-132386945	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000227220	Chromatin interaction
ENSG00000118523	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11961001	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11962845	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11967791	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12332897	0.86[JPT][hapmap]
rs12662375	0.86[JPT][hapmap]
rs13203667	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13209044	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13209246	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17060999	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17061002	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17061005	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17277038	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1980442	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34837500	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34942968	0.86[ASN][1000 genomes]
rs35023618	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35599250	0.93[ASN][1000 genomes]
rs35881065	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs41529847	0.89[CEU][hapmap]
rs4425614	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4897557	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56317827	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67724714	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs68052689	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6914252	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs6922298	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs71574604	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7748412	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7758139	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7770114	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7770134	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7772154	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9321320	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9483384	0.86[JPT][hapmap]
rs9493173	0.93[ASN][1000 genomes]
rs9493175	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9493179	0.86[JPT][hapmap]
rs9493181	0.86[JPT][hapmap]
rs969522	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427768	chr6:132300468-132398477	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132379200-132385600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:132379200-132386200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:132379400-132385600	Enhancers	NHDF-Ad	bronchial
4	chr6:132379600-132386200	Enhancers	Muscle Satellite Cultured Cells	--
5	chr6:132381400-132386800	Enhancers	NH-A	brain
6	chr6:132381800-132387000	Enhancers	HSMM	muscle
7	chr6:132383800-132385600	Enhancers	A549	lung
8	chr6:132383800-132385800	Enhancers	Osteobl	bone
9	chr6:132383800-132386200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:132384000-132385600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:132384000-132387600	Enhancers	HMEC	breast
12	chr6:132384200-132385400	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr6:132384200-132385400	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr6:132384200-132385400	Enhancers	HSMMtube	muscle
15	chr6:132384400-132385400	Enhancers	H9 Cell Line	embryonic stem cell
16	chr6:132384400-132385400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:132384400-132385400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr6:132384400-132385400	Enhancers	Rectal Smooth Muscle	rectum
19	chr6:132384400-132385600	Enhancers	HepG2	liver
20	chr6:132384400-132386000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr6:132384400-132386200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr6:132384400-132387000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr6:132384400-132387400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr6:132384400-132387600	Enhancers	NHEK	skin
25	chr6:132384400-132389200	Enhancers	HUVEC	blood vessel
26	chr6:132384600-132385400	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr6:132384600-132385400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr6:132384600-132386000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr6:132384800-132385400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr6:132385200-132386000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr6:132385200-132386600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr6:132385200-132386800	Weak transcription	Fetal Heart	heart
33	chr6:132385200-132387200	Weak transcription	Ovary	ovary
34	chr6:132385200-132390600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr6:132385200-132391400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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