Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11970972	1.00[EUR][1000 genomes]
rs11982024	1.00[EUR][1000 genomes]
rs11984270	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1404620	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1525087	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35931732	1.00[EUR][1000 genomes]
rs59826932	1.00[EUR][1000 genomes]
rs6946045	1.00[EUR][1000 genomes]
rs6950448	1.00[EUR][1000 genomes]
rs6958718	1.00[EUR][1000 genomes]
rs6964476	1.00[EUR][1000 genomes]
rs6975559	1.00[EUR][1000 genomes]
rs73680191	1.00[EUR][1000 genomes]
rs7790853	1.00[EUR][1000 genomes]
rs7791606	1.00[EUR][1000 genomes]
rs7800915	1.00[EUR][1000 genomes]
rs7802205	1.00[EUR][1000 genomes]
rs7802439	1.00[EUR][1000 genomes]
rs7805934	1.00[EUR][1000 genomes]
rs7809556	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1015777	chr7:14661754-14730811	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14680400-14684800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:14682800-14685400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
3	chr7:14684600-14685000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
4	chr7:14684600-14685200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:14684600-14685200	ZNF genes & repeats	Liver	Liver
6	chr7:14684600-14685400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain

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