Variant report

Variant	rs6964476
Chromosome Location	chr7:14731579-14731580
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11970972	1.00[EUR][1000 genomes]
rs11971372	1.00[EUR][1000 genomes]
rs11982024	1.00[EUR][1000 genomes]
rs11984270	1.00[EUR][1000 genomes]
rs1404620	1.00[EUR][1000 genomes]
rs1525087	1.00[EUR][1000 genomes]
rs16878291	1.00[EUR][1000 genomes]
rs35931732	1.00[EUR][1000 genomes]
rs59826932	1.00[EUR][1000 genomes]
rs6946045	1.00[EUR][1000 genomes]
rs6950448	1.00[EUR][1000 genomes]
rs6958718	1.00[EUR][1000 genomes]
rs6975559	1.00[EUR][1000 genomes]
rs73680191	1.00[EUR][1000 genomes]
rs7790853	1.00[EUR][1000 genomes]
rs7791606	1.00[EUR][1000 genomes]
rs7800915	1.00[EUR][1000 genomes]
rs7802205	1.00[EUR][1000 genomes]
rs7802439	1.00[EUR][1000 genomes]
rs7805934	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7809556	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv887712	chr7:14717872-14829858	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14704200-14736000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr7:14712800-14775200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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