Variant report

Variant	rs1197312
Chromosome Location	chr3:133125713-133125714
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1153876	0.87[CEU][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1197310	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1197311	0.91[JPT][hapmap]
rs517255	0.89[GIH][hapmap];0.83[TSI][hapmap];0.82[AMR][1000 genomes]
rs553211	0.81[AMR][1000 genomes]
rs652273	0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs656721	0.81[YRI][hapmap]
rs666067	0.86[CHB][hapmap];0.84[CHD][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs679749	0.89[GIH][hapmap];0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877504	chr3:133122216-133172374	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1197312	RAB6B	cis	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133104400-133131400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:133114200-133127400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr3:133122800-133128000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr3:133122800-133129400	Weak transcription	Fetal Lung	lung
5	chr3:133123000-133131800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr3:133123800-133131400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:133124000-133132000	Weak transcription	Brain Substantia Nigra	brain
8	chr3:133124200-133127000	Weak transcription	HSMM	muscle
9	chr3:133124400-133127200	Weak transcription	HSMMtube	muscle
10	chr3:133124600-133138400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr3:133125400-133131400	Weak transcription	Brain Inferior Temporal Lobe	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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