Variant report

Variant	rs1153876
Chromosome Location	chr3:133123736-133123737
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1197312	0.87[CEU][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2699880	0.84[CEU][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4854721	0.95[JPT][hapmap]
rs517255	0.81[CEU][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes]
rs553211	0.91[JPT][hapmap]
rs652273	0.83[CHB][hapmap]
rs679749	0.84[CEU][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6807356	0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877504	chr3:133122216-133172374	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133103800-133123800	Weak transcription	Brain Anterior Caudate	brain
2	chr3:133104400-133131400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:133107200-133123800	Weak transcription	Fetal Thymus	thymus
4	chr3:133114200-133127400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr3:133121600-133124800	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr3:133122000-133124000	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr3:133122000-133124200	Enhancers	Brain Hippocampus Middle	brain
8	chr3:133122000-133124600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr3:133122200-133123800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:133122200-133124000	Enhancers	Brain Substantia Nigra	brain
11	chr3:133122200-133124000	Enhancers	Fetal Muscle Leg	muscle
12	chr3:133122200-133124200	Enhancers	Brain Cingulate Gyrus	brain
13	chr3:133122200-133124200	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr3:133122400-133124000	Enhancers	Fetal Muscle Trunk	muscle
15	chr3:133122600-133124400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr3:133122800-133128000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr3:133122800-133129400	Weak transcription	Fetal Lung	lung
18	chr3:133123000-133123800	Weak transcription	Brain Angular Gyrus	brain
19	chr3:133123000-133131800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr3:133123200-133124000	Enhancers	H1 Cell Line	embryonic stem cell
21	chr3:133123400-133124400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr3:133123600-133123800	Enhancers	H9 Cell Line	embryonic stem cell
23	chr3:133123600-133124000	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr3:133123600-133124000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
25	chr3:133123600-133124200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr3:133123600-133124200	Enhancers	Fetal Brain Female	brain
27	chr3:133123600-133124200	Enhancers	HSMM	muscle
28	chr3:133123600-133124400	Enhancers	HUES64 Cell Line	embryonic stem cell
29	chr3:133123600-133124400	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr3:133123600-133124400	Enhancers	Brain Germinal Matrix	brain
31	chr3:133123600-133124400	Enhancers	HSMMtube	muscle

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