Variant report

Variant	rs6807356
Chromosome Location	chr3:133101390-133101391
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:133101161..133103236-chr3:133110708..133113387,2	MCF-7	breast:
2	chr3:133100753..133103511-chr3:133104610..133107430,2	K562	blood:
3	chr3:133100831..133103449-chr3:133112603..133115144,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1153876	0.95[JPT][hapmap]
rs1513363	0.83[MEX][hapmap]
rs16840213	0.82[MEX][hapmap]
rs17298063	0.83[MEX][hapmap]
rs1877586	0.83[MEX][hapmap]
rs1881919	0.83[MEX][hapmap]
rs3849406	0.83[MEX][hapmap]
rs4507250	0.83[MEX][hapmap]
rs4600815	0.83[MEX][hapmap]
rs4854579	0.83[MEX][hapmap]
rs4854707	0.83[MEX][hapmap]
rs4854721	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs517255	0.95[JPT][hapmap]
rs553211	0.95[JPT][hapmap]
rs679749	1.00[JPT][hapmap]
rs7648973	0.83[MEX][hapmap]
rs769097	0.83[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877503	chr3:133035774-133104631	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv460857	chr3:133101390-133122216	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv591801	chr3:133101390-133122216	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6807356	RAB6B	cis	parietal	SCAN

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133093000-133102400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:133094000-133109000	Weak transcription	HSMM	muscle
3	chr3:133094400-133102800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:133094800-133102000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr3:133094800-133110400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr3:133095200-133103200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr3:133095800-133103200	Weak transcription	Fetal Muscle Trunk	muscle
8	chr3:133096000-133107800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr3:133096400-133103200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr3:133097800-133102400	Strong transcription	Cortex derived primary cultured neurospheres	brain
11	chr3:133098800-133101400	Enhancers	Pancreas	Pancrea
12	chr3:133098800-133103600	Weak transcription	Spleen	Spleen
13	chr3:133098800-133103800	Enhancers	Fetal Brain Male	brain
14	chr3:133099000-133101600	Genic enhancers	Fetal Brain Female	brain
15	chr3:133099000-133117000	Weak transcription	Placenta	Placenta
16	chr3:133099600-133122600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr3:133099800-133103000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr3:133100000-133101400	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr3:133100000-133101600	Enhancers	Fetal Muscle Leg	muscle
20	chr3:133100200-133103200	Weak transcription	Brain Hippocampus Middle	brain
21	chr3:133100200-133103600	Weak transcription	Brain Germinal Matrix	brain
22	chr3:133100400-133102800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr3:133100400-133103000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr3:133100400-133103200	Weak transcription	Brain Angular Gyrus	brain
25	chr3:133100800-133101800	Genic enhancers	Fetal Lung	lung
26	chr3:133100800-133102800	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr3:133100800-133111600	Weak transcription	HSMMtube	muscle
28	chr3:133101000-133103000	Weak transcription	Liver	Liver
29	chr3:133101000-133103800	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr3:133101200-133103200	Weak transcription	Brain Cingulate Gyrus	brain
31	chr3:133101200-133103400	Enhancers	Lung	lung

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