Variant report

Variant	rs4854721
Chromosome Location	chr3:133113138-133113139
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:133101161..133103236-chr3:133110708..133113387,2	MCF-7	breast:
2	chr3:133112630..133114708-chr3:133139610..133142045,2	MCF-7	breast:
3	chr3:133100831..133103449-chr3:133112603..133115144,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1153876	0.95[JPT][hapmap]
rs517255	0.95[JPT][hapmap]
rs553211	0.96[JPT][hapmap]
rs679749	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6807356	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460857	chr3:133101390-133122216	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv591801	chr3:133101390-133122216	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133099000-133117000	Weak transcription	Placenta	Placenta
2	chr3:133099600-133122600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:133103400-133115200	Weak transcription	Lung	lung
4	chr3:133103400-133123200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr3:133103400-133123600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr3:133103800-133115800	Weak transcription	Fetal Muscle Leg	muscle
7	chr3:133103800-133118600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr3:133103800-133123800	Weak transcription	Brain Anterior Caudate	brain
9	chr3:133104000-133122200	Weak transcription	Brain Substantia Nigra	brain
10	chr3:133104400-133131400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr3:133107200-133123800	Weak transcription	Fetal Thymus	thymus
12	chr3:133108000-133115200	Weak transcription	Fetal Muscle Trunk	muscle
13	chr3:133110000-133120400	Weak transcription	Brain Angular Gyrus	brain
14	chr3:133110200-133120400	Weak transcription	Fetal Brain Male	brain
15	chr3:133110800-133123600	Weak transcription	HSMM	muscle
16	chr3:133111400-133113200	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr3:133111600-133113600	Strong transcription	HSMMtube	muscle
18	chr3:133111800-133113200	Enhancers	Right Atrium	heart
19	chr3:133111800-133114200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr3:133112000-133113200	Enhancers	Right Ventricle	heart
21	chr3:133112000-133114000	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr3:133112200-133114200	Enhancers	Osteobl	bone
23	chr3:133112400-133113200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
24	chr3:133112400-133114800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr3:133112600-133113200	Genic enhancers	Muscle Satellite Cultured Cells	--
26	chr3:133112600-133113400	Strong transcription	Fetal Lung	lung
27	chr3:133112600-133119400	Strong transcription	Fetal Brain Female	brain
28	chr3:133112600-133120400	Weak transcription	Brain Hippocampus Middle	brain
29	chr3:133112600-133122200	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr3:133112800-133113200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr3:133112800-133113200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
32	chr3:133112800-133113200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr3:133112800-133113200	ZNF genes & repeats	Brain Germinal Matrix	brain
34	chr3:133112800-133113400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr3:133112800-133114200	Strong transcription	Skeletal Muscle Male	skeletal muscle
36	chr3:133113000-133116000	Weak transcription	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links