Variant report

Variant	rs11973378
Chromosome Location	chr7:13010916-13010917
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1019169	0.82[AFR][1000 genomes]
rs1019170	0.82[AFR][1000 genomes]
rs10215323	0.90[AFR][1000 genomes]
rs10228675	0.92[EUR][1000 genomes]
rs11770374	0.89[EUR][1000 genomes]
rs11972031	0.87[AFR][1000 genomes]
rs2024403	0.90[AFR][1000 genomes]
rs2024405	0.90[AFR][1000 genomes]
rs2024406	0.90[AFR][1000 genomes]
rs2058616	0.89[ASN][1000 genomes]
rs2058617	0.90[AFR][1000 genomes]
rs2192677	0.90[AFR][1000 genomes]
rs2215949	0.90[AFR][1000 genomes]
rs246825	0.88[AFR][1000 genomes]
rs34040	0.87[AFR][1000 genomes]
rs34041	0.88[AFR][1000 genomes]
rs34042	0.90[AFR][1000 genomes]
rs34043	0.90[AFR][1000 genomes]
rs34045	0.87[AFR][1000 genomes]
rs34046	0.85[AFR][1000 genomes]
rs34047	0.85[AFR][1000 genomes]
rs34050	0.84[AFR][1000 genomes]
rs34051	0.85[AFR][1000 genomes]
rs34052	0.85[AFR][1000 genomes]
rs34057	0.82[AFR][1000 genomes]
rs34058	0.82[AFR][1000 genomes]
rs34059	0.82[AFR][1000 genomes]
rs34060	0.82[AFR][1000 genomes]
rs34062	0.82[AFR][1000 genomes]
rs34063	0.82[AFR][1000 genomes]
rs34064	0.82[AFR][1000 genomes]
rs34065	0.82[AFR][1000 genomes]
rs4721166	0.88[AFR][1000 genomes]
rs6460991	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6970761	0.88[AFR][1000 genomes]
rs7776798	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7781173	0.90[AFR][1000 genomes]
rs7786529	0.90[AFR][1000 genomes]
rs7789443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7790122	0.94[EUR][1000 genomes]
rs7794754	0.91[EUR][1000 genomes]
rs7806859	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932020	chr7:12676890-13239551	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv868830	chr7:12712753-13517417	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv606235	chr7:12781381-13205950	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1020568	chr7:12802640-13183737	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv464384	chr7:12907178-13077065	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv606238	chr7:12907178-13077065	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1029771	chr7:12927648-13153855	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv538736	chr7:12927648-13153855	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv1026624	chr7:12963907-13123408	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv887642	chr7:12973609-13067198	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	esv3389111	chr7:13006761-13030098	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:13010400-13011200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:13010800-13014000	Weak transcription	Liver	Liver

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