Variant report

Variant	rs7789443
Chromosome Location	chr7:13010195-13010196
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:13007791..13010494-chr7:13016088..13018337,2	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1019169	0.82[AFR][1000 genomes]
rs1019170	0.82[AFR][1000 genomes]
rs10215323	0.90[AFR][1000 genomes]
rs10228675	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs11770374	0.89[EUR][1000 genomes]
rs11972031	0.87[AFR][1000 genomes]
rs11973378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2024403	0.90[AFR][1000 genomes]
rs2024405	0.90[AFR][1000 genomes]
rs2024406	0.90[AFR][1000 genomes]
rs2058616	0.89[ASN][1000 genomes]
rs2058617	1.00[ASW][hapmap];0.90[AFR][1000 genomes]
rs2192677	0.90[AFR][1000 genomes]
rs2215949	0.90[AFR][1000 genomes]
rs246825	0.88[AFR][1000 genomes]
rs34040	0.87[AFR][1000 genomes]
rs34041	0.88[AFR][1000 genomes]
rs34042	0.90[AFR][1000 genomes]
rs34043	0.90[AFR][1000 genomes]
rs34045	0.87[AFR][1000 genomes]
rs34046	0.85[AFR][1000 genomes]
rs34047	0.85[AFR][1000 genomes]
rs34050	0.84[AFR][1000 genomes]
rs34051	0.85[AFR][1000 genomes]
rs34052	0.85[AFR][1000 genomes]
rs34057	0.82[AFR][1000 genomes]
rs34058	0.82[AFR][1000 genomes]
rs34059	0.82[AFR][1000 genomes]
rs34060	0.82[AFR][1000 genomes]
rs34062	0.82[AFR][1000 genomes]
rs34063	0.82[AFR][1000 genomes]
rs34064	0.82[AFR][1000 genomes]
rs34065	0.82[AFR][1000 genomes]
rs34075	1.00[ASW][hapmap]
rs4721166	0.88[AFR][1000 genomes]
rs6460991	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6970761	0.88[AFR][1000 genomes]
rs7776798	0.90[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7781173	0.90[AFR][1000 genomes]
rs7786098	0.82[TSI][hapmap]
rs7786529	0.90[AFR][1000 genomes]
rs7790122	0.94[EUR][1000 genomes]
rs7794754	0.91[EUR][1000 genomes]
rs7806859	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932020	chr7:12676890-13239551	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv868830	chr7:12712753-13517417	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv606235	chr7:12781381-13205950	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1020568	chr7:12802640-13183737	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv464384	chr7:12907178-13077065	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv606238	chr7:12907178-13077065	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1029771	chr7:12927648-13153855	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv538736	chr7:12927648-13153855	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv1026624	chr7:12963907-13123408	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv887642	chr7:12973609-13067198	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	esv3389111	chr7:13006761-13030098	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7789443	SSTR2	trans	lymphoblastoid	seeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:13004600-13010400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:13006000-13010800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:13009000-13010400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:13009800-13010800	Enhancers	Liver	Liver
5	chr7:13010000-13010600	Enhancers	Brain Germinal Matrix	brain
6	chr7:13010000-13010800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr7:13010000-13010800	Enhancers	Cortex derived primary cultured neurospheres	brain

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