Variant report

Variant	rs11974871
Chromosome Location	chr7:150270999-150271000
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GIMAP7-1	chr7:150270658-150271040	NONHSAT124144

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1009861	1.00[MEX][hapmap]
rs11971313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11974345	0.82[ASW][hapmap]
rs11977216	0.82[ASW][hapmap];1.00[MEX][hapmap]
rs11977646	0.85[AFR][1000 genomes]
rs61048161	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6464066	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs73727329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73727330	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73727331	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7810712	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034409	chr7:149844639-150447071	Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1015582	chr7:149967986-150285104	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
4	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
5	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
6	esv3395746	chr7:150181141-150300680	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	esv16529	chr7:150249312-150312843	Genic enhancers Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
8	esv2758617	chr7:150251949-150463804	Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
9	esv2759573	chr7:150251949-150463804	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150265200-150271400	Weak transcription	Gastric	stomach
2	chr7:150267000-150271400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr7:150267000-150272400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr7:150267200-150271400	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
5	chr7:150267600-150271000	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr7:150267800-150278200	Weak transcription	Primary B cells from cord blood	blood
7	chr7:150268000-150271400	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
8	chr7:150268000-150271400	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
9	chr7:150268000-150272000	Weak transcription	Brain Substantia Nigra	brain
10	chr7:150268200-150271000	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
11	chr7:150268200-150271200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
12	chr7:150268200-150271400	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
13	chr7:150268200-150271400	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr7:150268200-150271600	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
15	chr7:150268400-150271000	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
16	chr7:150268400-150271200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
17	chr7:150268400-150271200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
18	chr7:150268400-150271400	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
19	chr7:150268400-150271600	ZNF genes & repeats	Primary T cells from cord blood	blood
20	chr7:150269000-150271400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
21	chr7:150269600-150271200	Strong transcription	HUVEC	blood vessel
22	chr7:150269800-150278200	Weak transcription	Colonic Mucosa	Colon
23	chr7:150269800-150282400	Weak transcription	Right Ventricle	heart
24	chr7:150270200-150271000	Weak transcription	Brain Hippocampus Middle	brain
25	chr7:150270200-150271000	Weak transcription	Duodenum Mucosa	Duodenum
26	chr7:150270200-150272200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr7:150270200-150277600	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr7:150270200-150281800	Weak transcription	Spleen	Spleen
29	chr7:150270400-150272800	Weak transcription	Placenta	Placenta
30	chr7:150270400-150275000	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr7:150270400-150276600	Weak transcription	Primary neutrophils fromperipheralblood	blood

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