Variant report

Variant	rs6464066
Chromosome Location	chr7:150158140-150158141
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:150157148..150158913-chr7:150160774..150162624,2	MCF-7	breast:
2	chr7:150145478..150147252-chr7:150156941..150159587,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11971313	1.00[AMR][1000 genomes]
rs11974871	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs11977216	1.00[MEX][hapmap]
rs61048161	1.00[AMR][1000 genomes]
rs6947074	0.88[YRI][hapmap];0.88[AFR][1000 genomes]
rs73727329	1.00[AMR][1000 genomes]
rs73727330	1.00[AMR][1000 genomes]
rs73727331	1.00[AMR][1000 genomes]
rs7810712	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034409	chr7:149844639-150447071	Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1015582	chr7:149967986-150285104	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
4	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
5	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
6	nsv1025129	chr7:150146593-150266217	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150150200-150159000	Weak transcription	Thymus	Thymus
2	chr7:150151200-150162000	Weak transcription	Right Ventricle	heart
3	chr7:150151400-150162000	Weak transcription	HUVEC	blood vessel
4	chr7:150154200-150162400	Weak transcription	Fetal Thymus	thymus
5	chr7:150155000-150160800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
6	chr7:150155800-150160000	ZNF genes & repeats	Primary T cells from cord blood	blood
7	chr7:150156200-150160400	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
8	chr7:150156200-150163000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr7:150156400-150158200	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
10	chr7:150156400-150159600	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
11	chr7:150156400-150160000	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
12	chr7:150156400-150160600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
13	chr7:150156600-150158200	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
14	chr7:150156600-150159800	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
15	chr7:150156600-150161000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
16	chr7:150157000-150159400	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
17	chr7:150157000-150159800	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
18	chr7:150157000-150162200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr7:150157400-150160200	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
20	chr7:150157400-150160800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
21	chr7:150157600-150158200	Strong transcription	Left Ventricle	heart
22	chr7:150157600-150158400	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
23	chr7:150157600-150160800	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr7:150157800-150158200	ZNF genes & repeats	Psoas Muscle	Psoas
25	chr7:150157800-150158400	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
26	chr7:150157800-150158600	ZNF genes & repeats	Liver	Liver
27	chr7:150157800-150159200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
28	chr7:150158000-150158400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr7:150158000-150168000	Weak transcription	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links