Variant report

Variant	rs11975602
Chromosome Location	chr7:87794314-87794315
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10238607	0.82[CHB][hapmap]
rs10441268	0.82[CHB][hapmap]
rs12666405	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12668809	0.88[ASN][1000 genomes]
rs12669633	0.88[ASN][1000 genomes]
rs12670387	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12704386	0.82[CHB][hapmap]
rs17150196	0.88[ASN][1000 genomes]
rs17150234	0.88[ASN][1000 genomes]
rs17150244	0.92[ASN][1000 genomes]
rs2022161	1.00[JPT][hapmap]
rs2022162	0.82[JPT][hapmap]
rs2240468	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3810881	1.00[JPT][hapmap]
rs4728728	0.86[JPT][hapmap]
rs4728730	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7457753	0.82[CHB][hapmap]
rs7792733	0.82[YRI][hapmap]
rs7810342	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015862	chr7:87075394-88049798	Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1023352	chr7:87418818-88192925	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv539005	chr7:87418818-88192925	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv525073	chr7:87535096-87812968	Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv532148	chr7:87760675-88149417	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:87767400-87796400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:87776200-87805600	Weak transcription	Fetal Brain Male	brain
3	chr7:87776200-87831600	Weak transcription	Left Ventricle	heart
4	chr7:87777600-87796200	Weak transcription	Brain Substantia Nigra	brain
5	chr7:87781000-87796200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr7:87781000-87796200	Weak transcription	Brain Hippocampus Middle	brain
7	chr7:87781000-87796400	Weak transcription	Brain Anterior Caudate	brain
8	chr7:87783000-87797400	Weak transcription	Primary hematopoietic stem cells	blood
9	chr7:87783600-87796200	Weak transcription	Brain Angular Gyrus	brain
10	chr7:87787400-87813600	Weak transcription	GM12878-XiMat	blood
11	chr7:87790400-87796400	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr7:87793200-87796600	Weak transcription	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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