Variant report

Variant	rs4728730
Chromosome Location	chr7:87704972-87704973
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:87702607..87705173-chr7:89180961..89183467,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11975602	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12666405	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12668809	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12669633	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12670500	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17150134	0.87[ASN][1000 genomes]
rs17150196	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17150234	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17150244	1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2022161	1.00[JPT][hapmap]
rs2022162	1.00[JPT][hapmap]
rs2237535	0.84[JPT][hapmap]
rs2237536	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2237538	1.00[JPT][hapmap];0.84[MKK][hapmap];1.00[YRI][hapmap]
rs2240468	1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[ASN][1000 genomes]
rs2282945	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2282946	1.00[JPT][hapmap]
rs3810881	1.00[ASW][hapmap];1.00[JPT][hapmap];0.83[MKK][hapmap];0.83[ASN][1000 genomes]
rs4728723	1.00[ASW][hapmap];1.00[JPT][hapmap];0.84[MKK][hapmap];1.00[YRI][hapmap]
rs4728724	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4728728	0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs4728729	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888677	chr7:86802025-87781111	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1015862	chr7:87075394-88049798	Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv1023352	chr7:87418818-88192925	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv539005	chr7:87418818-88192925	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv525073	chr7:87535096-87812968	Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:87701600-87705000	Enhancers	Dnd41	blood
2	chr7:87702000-87705800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr7:87702200-87705800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr7:87702200-87706000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr7:87703000-87718800	Weak transcription	Brain Angular Gyrus	brain
6	chr7:87703800-87705000	Enhancers	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links