Variant report

Variant	rs11975799
Chromosome Location	chr7:150846188-150846189
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:150833743..150841006-chr7:150841442..150846687,15	K562	blood:
2	chr7:150820127..150822106-chr7:150845109..150847373,2	K562	blood:
3	chr7:150845808..150850265-chr7:150853746..150856183,4	MCF-7	breast:
4	chr7:150844813..150847303-chr7:150922806..150925646,2	MCF-7	breast:
5	chr7:150845862..150848096-chr7:150856287..150857935,2	K562	blood:
6	chr7:150820162..150822106-chr7:150844954..150846609,2	K562	blood:
7	chr7:150846055..150848311-chr7:150863585..150865169,2	K562	blood:

Variant related genes	Relation type
ENSG00000133612	Chromatin interaction
ENSG00000033050	Chromatin interaction
ENSG00000164900	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10241160	0.90[YRI][hapmap]
rs7789289	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7808684	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1821419	chr7:150593315-150974269	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	128 gene(s)	inside rSNPs	diseases
2	nsv539198	chr7:150643928-150879259	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
3	nsv889476	chr7:150729212-150951819	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	120 gene(s)	inside rSNPs	diseases
4	nsv889478	chr7:150732812-150889527	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	61 gene(s)	inside rSNPs	diseases
5	nsv831188	chr7:150735204-150912875	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
6	nsv889482	chr7:150766799-150851566	Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
7	nsv889486	chr7:150775306-150891641	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
8	nsv609034	chr7:150830015-150893629	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150834000-150847200	Weak transcription	Hela-S3	cervix
2	chr7:150836000-150848200	Weak transcription	Right Atrium	heart
3	chr7:150841400-150862800	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr7:150841600-150847000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr7:150841800-150847000	Weak transcription	Esophagus	oesophagus
6	chr7:150841800-150847600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr7:150842400-150846800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr7:150842400-150852000	Weak transcription	Pancreas	Pancrea
9	chr7:150842400-150859200	Weak transcription	Left Ventricle	heart
10	chr7:150842600-150846600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr7:150842600-150847600	Weak transcription	Right Ventricle	heart
12	chr7:150843400-150852000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr7:150844800-150856400	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr7:150845600-150846400	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr7:150846000-150846200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
16	chr7:150846000-150846200	Enhancers	Brain Germinal Matrix	brain
17	chr7:150846000-150846200	Bivalent Enhancer	Fetal Intestine Small	intestine
18	chr7:150846000-150846200	Bivalent Enhancer	Fetal Muscle Leg	muscle
19	chr7:150846000-150846200	Enhancers	Placenta Amnion	Placenta Amnion
20	chr7:150846000-150847200	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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