Variant report

Variant	rs11976694
Chromosome Location	chr7:138220773-138220774
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11983995	0.88[AFR][1000 genomes]
rs11984394	0.98[AFR][1000 genomes]
rs6947224	0.82[AFR][1000 genomes]
rs7780581	0.96[AFR][1000 genomes]
rs7783440	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831153	chr7:138078179-138265648	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1030956	chr7:138163169-138579519	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138212800-138222600	Weak transcription	Fetal Heart	heart
2	chr7:138213000-138221200	Weak transcription	Gastric	stomach
3	chr7:138213000-138221400	Weak transcription	Lung	lung
4	chr7:138213000-138221800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr7:138213000-138222800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr7:138213000-138222800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr7:138213000-138223000	Weak transcription	Hela-S3	cervix
8	chr7:138213000-138223200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr7:138213000-138223600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr7:138213000-138223800	Weak transcription	Stomach Mucosa	stomach
11	chr7:138213000-138224800	Weak transcription	HSMM	muscle
12	chr7:138213000-138225000	Weak transcription	Fetal Brain Male	brain
13	chr7:138213000-138230800	Weak transcription	NHLF	lung
14	chr7:138213000-138234000	Weak transcription	Brain Hippocampus Middle	brain
15	chr7:138213000-138234800	Weak transcription	Rectal Smooth Muscle	rectum
16	chr7:138213000-138235200	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr7:138213000-138235600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr7:138213000-138235800	Weak transcription	Brain Angular Gyrus	brain
19	chr7:138213000-138235800	Weak transcription	Pancreas	Pancrea
20	chr7:138213000-138235800	Weak transcription	NHDF-Ad	bronchial
21	chr7:138213000-138235800	Weak transcription	Osteobl	bone
22	chr7:138213000-138236800	Weak transcription	HSMMtube	muscle
23	chr7:138213000-138238600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr7:138213000-138239400	Weak transcription	Right Atrium	heart
25	chr7:138213000-138244200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr7:138213200-138221200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr7:138213200-138222400	Weak transcription	Brain Substantia Nigra	brain
28	chr7:138213200-138235800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr7:138213200-138235800	Weak transcription	Colon Smooth Muscle	Colon
30	chr7:138213200-138236000	Weak transcription	Right Ventricle	heart
31	chr7:138213400-138223400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr7:138213400-138225200	Weak transcription	Brain Anterior Caudate	brain
33	chr7:138213600-138223400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr7:138214400-138222400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr7:138214400-138223200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr7:138214400-138224000	Weak transcription	NH-A	brain
37	chr7:138214600-138221200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr7:138214600-138222400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr7:138214600-138222400	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr7:138214600-138222800	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr7:138214600-138222800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr7:138214600-138223400	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr7:138214600-138224000	Weak transcription	A549	lung
44	chr7:138214600-138235800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr7:138214600-138235800	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr7:138214600-138235800	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr7:138215000-138223600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr7:138215600-138222800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr7:138215800-138220800	Weak transcription	Liver	Liver
50	chr7:138215800-138221000	Weak transcription	Fetal Intestine Large	intestine

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