Variant report

Variant	rs7783440
Chromosome Location	chr7:138185543-138185544
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:138183893..138185879-chr7:138185893..138187942,2	K562	blood:
2	chr7:138183809..138187798-chr7:138191193..138194471,3	MCF-7	breast:
3	chr7:138179996..138182468-chr7:138183399..138185707,2	K562	blood:
4	chr7:138185465..138187432-chr7:138190307..138193064,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11976694	1.00[AFR][1000 genomes]
rs11983995	0.88[AFR][1000 genomes]
rs11984394	0.98[AFR][1000 genomes]
rs6947224	0.82[AFR][1000 genomes]
rs7780581	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831153	chr7:138078179-138265648	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv1030956	chr7:138163169-138579519	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138147200-138189000	Weak transcription	Thymus	Thymus
2	chr7:138149800-138188600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr7:138157600-138191400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:138161800-138195800	Weak transcription	Fetal Brain Female	brain
5	chr7:138164000-138191400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr7:138164000-138199800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr7:138165000-138192000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr7:138168000-138196200	Weak transcription	Left Ventricle	heart
9	chr7:138169000-138190200	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr7:138175200-138201200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr7:138176400-138186800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr7:138176600-138190200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr7:138176600-138203600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr7:138177000-138189800	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr7:138177000-138190200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr7:138177000-138212600	Weak transcription	Pancreas	Pancrea
17	chr7:138177600-138194600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:138178600-138189200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr7:138178600-138191400	Weak transcription	Right Atrium	heart
20	chr7:138178600-138212200	Weak transcription	NHLF	lung
21	chr7:138180200-138204200	Weak transcription	Brain Substantia Nigra	brain
22	chr7:138180600-138185600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr7:138182200-138196200	Weak transcription	Spleen	Spleen
24	chr7:138183000-138196400	Weak transcription	Fetal Lung	lung
25	chr7:138183000-138203600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr7:138183400-138185800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr7:138184000-138187000	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr7:138184200-138186800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr7:138184400-138185800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr7:138184400-138186200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr7:138184400-138186800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr7:138184400-138186800	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr7:138184400-138187000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr7:138184400-138189000	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr7:138184400-138189000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr7:138184400-138189000	Weak transcription	Fetal Thymus	thymus
37	chr7:138184400-138189000	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr7:138184400-138190200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr7:138184400-138194600	Weak transcription	Gastric	stomach
40	chr7:138184400-138196200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr7:138184400-138196200	Weak transcription	Fetal Muscle Trunk	muscle
42	chr7:138184400-138196400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr7:138184400-138196400	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr7:138184400-138197000	Weak transcription	Aorta	Aorta
45	chr7:138184400-138198600	Weak transcription	Brain Cingulate Gyrus	brain
46	chr7:138184600-138185600	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr7:138184600-138186000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr7:138184600-138186000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr7:138184600-138186400	Weak transcription	Lung	lung
50	chr7:138184600-138186600	Strong transcription	Fetal Intestine Small	intestine

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