Variant report

Variant	rs11977772
Chromosome Location	chr7:150283218-150283219
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10249236	1.00[EUR][1000 genomes]
rs11972223	1.00[EUR][1000 genomes]
rs11977022	1.00[EUR][1000 genomes]
rs11977474	1.00[EUR][1000 genomes]
rs11981041	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11983363	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11983983	1.00[EUR][1000 genomes]
rs28375807	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28651123	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28690331	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55812434	1.00[EUR][1000 genomes]
rs55992343	1.00[EUR][1000 genomes]
rs56305034	1.00[EUR][1000 genomes]
rs57299368	1.00[EUR][1000 genomes]
rs57716148	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58255573	1.00[EUR][1000 genomes]
rs58281055	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58613922	1.00[EUR][1000 genomes]
rs6464065	1.00[EUR][1000 genomes]
rs6946830	1.00[EUR][1000 genomes]
rs73478442	1.00[EUR][1000 genomes]
rs73726126	1.00[EUR][1000 genomes]
rs73726130	1.00[EUR][1000 genomes]
rs7776587	1.00[EUR][1000 genomes]
rs7788154	1.00[EUR][1000 genomes]
rs7788229	1.00[EUR][1000 genomes]
rs7807202	1.00[EUR][1000 genomes]
rs7808266	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034409	chr7:149844639-150447071	Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1015582	chr7:149967986-150285104	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
4	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
5	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
6	esv3395746	chr7:150181141-150300680	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	esv16529	chr7:150249312-150312843	Genic enhancers Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
8	esv2758617	chr7:150251949-150463804	Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
9	esv2759573	chr7:150251949-150463804	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150278400-150283400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr7:150278600-150283400	Weak transcription	Primary B cells from cord blood	blood
3	chr7:150279000-150283400	Weak transcription	Liver	Liver
4	chr7:150280000-150283600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr7:150281000-150284000	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr7:150281000-150285200	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr7:150281400-150283400	Enhancers	HUVEC	blood vessel
8	chr7:150281400-150285200	Enhancers	Primary T cells from cord blood	blood
9	chr7:150281600-150284600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr7:150281800-150283800	Enhancers	Left Ventricle	heart
11	chr7:150281800-150284400	Enhancers	Spleen	Spleen
12	chr7:150281800-150284600	Enhancers	Primary T cells fromperipheralblood	blood
13	chr7:150281800-150285000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr7:150282000-150284800	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr7:150282000-150285000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr7:150282200-150283800	Enhancers	Fetal Heart	heart
17	chr7:150282400-150284200	Enhancers	Right Ventricle	heart
18	chr7:150282400-150285400	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr7:150282400-150285400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr7:150282600-150283400	Enhancers	Adipose Nuclei	Adipose
21	chr7:150282600-150284600	Enhancers	Right Atrium	heart
22	chr7:150282600-150285000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
23	chr7:150282800-150285000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr7:150282800-150285200	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr7:150283000-150283800	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr7:150283000-150284600	Enhancers	Primary hematopoietic stem cells	blood
27	chr7:150283000-150284800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
28	chr7:150283200-150284400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr7:150283200-150284800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
30	chr7:150283200-150285000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr7:150283200-150285400	Enhancers	Primary T helper naive cells from peripheral blood	blood

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