Variant report

Variant	rs11983983
Chromosome Location	chr7:150300325-150300326
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11972223	1.00[EUR][1000 genomes]
rs11977022	1.00[EUR][1000 genomes]
rs11977474	1.00[EUR][1000 genomes]
rs11977772	1.00[EUR][1000 genomes]
rs11981041	1.00[EUR][1000 genomes]
rs11983363	1.00[EUR][1000 genomes]
rs28375807	1.00[EUR][1000 genomes]
rs28651123	1.00[EUR][1000 genomes]
rs28690331	1.00[EUR][1000 genomes]
rs57716148	1.00[EUR][1000 genomes]
rs58281055	1.00[EUR][1000 genomes]
rs73478442	1.00[EUR][1000 genomes]
rs7788154	1.00[EUR][1000 genomes]
rs7788229	1.00[EUR][1000 genomes]
rs7807202	1.00[EUR][1000 genomes]
rs7808266	1.00[EUR][1000 genomes]
rs9969122	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034409	chr7:149844639-150447071	Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
4	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
5	esv3395746	chr7:150181141-150300680	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	esv16529	chr7:150249312-150312843	Genic enhancers Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
7	esv2758617	chr7:150251949-150463804	Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
8	esv2759573	chr7:150251949-150463804	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
9	esv1793193	chr7:150285801-150301569	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
10	esv1800872	chr7:150285801-150301569	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
11	esv1804946	chr7:150285801-150301569	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
12	esv1814847	chr7:150285801-150301569	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
13	esv1835596	chr7:150285801-150301569	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
14	esv1841982	chr7:150285801-150301569	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
15	nsv442238	chr7:150285801-150301569	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
16	esv13954	chr7:150292485-150307048	Enhancers Weak transcription Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
17	esv3490967	chr7:150293370-150301941	Enhancers Weak transcription Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
18	esv3490968	chr7:150293370-150301941	Enhancers Weak transcription Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
19	nsv511998	chr7:150299281-150306979	Enhancers Weak transcription Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
20	esv3366219	chr7:150299819-150305317	Flanking Active TSS Weak transcription Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
21	esv1005919	chr7:150299834-150306808	Weak transcription Enhancers Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
22	esv3431995	chr7:150299969-150305067	Weak transcription Flanking Active TSS Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
23	esv3478424	chr7:150299997-150302657	Enhancers Weak transcription Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
24	esv3478425	chr7:150299997-150302657	Enhancers Weak transcription Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150300200-150300600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
2	chr7:150300200-150300800	Enhancers	Primary T killer memory cells from peripheral blood	blood
3	chr7:150300200-150301000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
4	chr7:150300200-150301200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr7:150300200-150301400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr7:150300200-150301600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr7:150300200-150301800	Enhancers	Primary T cells from cord blood	blood
8	chr7:150300200-150301800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr7:150300200-150303000	Enhancers	Primary T helper naive cells from peripheral blood	blood

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