Variant report

Variant	rs9969122
Chromosome Location	chr7:150447003-150447004
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GIMAP5-1	chr7:150446820-150447121	NONHSAT124151
2	lnc-GIMAP5-1	chr7:150446824-150447182	NONHSAT124154
3	lnc-GIMAP5-1	chr7:150446824-150447058	NONHSAT124155

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11972223	1.00[EUR][1000 genomes]
rs11973850	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11977474	1.00[EUR][1000 genomes]
rs11981041	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11983363	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11983983	1.00[EUR][1000 genomes]
rs28375807	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28651123	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28690331	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58281055	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59056007	1.00[EUR][1000 genomes]
rs59483069	1.00[EUR][1000 genomes]
rs59997037	1.00[EUR][1000 genomes]
rs73478442	1.00[EUR][1000 genomes]
rs7788154	1.00[EUR][1000 genomes]
rs7788229	1.00[EUR][1000 genomes]
rs7807202	1.00[EUR][1000 genomes]
rs7808266	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034409	chr7:149844639-150447071	Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
4	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
5	esv2758617	chr7:150251949-150463804	Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	esv2759573	chr7:150251949-150463804	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	nsv1030109	chr7:150312916-150701010	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
8	nsv967475	chr7:150323577-150610034	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
9	nsv831187	chr7:150325913-150503500	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150436200-150450200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr7:150436800-150451400	Weak transcription	Brain Substantia Nigra	brain
3	chr7:150437000-150450000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr7:150440600-150449200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr7:150441400-150449800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr7:150441600-150447800	Weak transcription	Gastric	stomach
7	chr7:150441600-150450200	Weak transcription	Right Atrium	heart
8	chr7:150442200-150450000	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr7:150442400-150449800	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr7:150442400-150454600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr7:150442600-150449000	Weak transcription	Adipose Nuclei	Adipose
12	chr7:150442800-150450000	Weak transcription	Dnd41	blood
13	chr7:150443000-150452200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr7:150443200-150447200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
15	chr7:150443200-150450000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr7:150443200-150451200	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr7:150443200-150452200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr7:150443200-150452400	Weak transcription	Spleen	Spleen
19	chr7:150443400-150449200	Weak transcription	Left Ventricle	heart
20	chr7:150443400-150449400	Weak transcription	Right Ventricle	heart
21	chr7:150444000-150447200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr7:150444600-150452200	Enhancers	Primary T cells from cord blood	blood
23	chr7:150444800-150448200	Enhancers	Primary T cells fromperipheralblood	blood
24	chr7:150445400-150452000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr7:150445600-150452200	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr7:150445800-150450000	Weak transcription	Fetal Thymus	thymus
27	chr7:150446000-150450200	Weak transcription	Duodenum Mucosa	Duodenum
28	chr7:150446200-150448200	Enhancers	Liver	Liver
29	chr7:150446200-150450000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr7:150446200-150451400	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr7:150446200-150452200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
32	chr7:150446400-150449000	Weak transcription	GM12878-XiMat	blood
33	chr7:150446600-150450000	Enhancers	Primary T helper cells PMA-I stimulated	--
34	chr7:150447000-150447400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr7:150447000-150447800	Weak transcription	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links