Variant report

Variant	rs11979336
Chromosome Location	chr7:63956909-63956910
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:63952467..63955112-chr7:63955599..63957119,2	MCF-7	breast:

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1018581	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10228666	0.86[CEU][hapmap]
rs10235312	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10236450	0.86[EUR][1000 genomes]
rs10243731	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs10248437	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10258736	0.86[CEU][hapmap]
rs10272999	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10279359	0.90[ASN][1000 genomes]
rs10499777	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs11772788	0.86[JPT][hapmap]
rs11973673	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11974106	0.99[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11976837	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs12674124	0.85[ASN][1000 genomes]
rs13229310	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13230924	1.00[CEU][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs13235345	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs13235710	0.88[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs13238250	0.87[EUR][1000 genomes]
rs13238743	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs13239925	0.86[EUR][1000 genomes]
rs13242372	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs13246918	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs13247467	0.87[EUR][1000 genomes]
rs1589848	0.81[CHB][hapmap]
rs1596927	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs17139165	0.81[JPT][hapmap]
rs17146392	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17540510	0.93[ASN][1000 genomes]
rs1871246	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs2127039	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2293344	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs28620773	0.98[ASN][1000 genomes]
rs2862880	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35712020	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4717194	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4717195	0.83[ASN][1000 genomes]
rs57323647	0.96[ASN][1000 genomes]
rs57810730	0.88[ASN][1000 genomes]
rs59243255	0.93[ASN][1000 genomes]
rs59617471	0.93[ASN][1000 genomes]
rs61046711	0.91[ASN][1000 genomes]
rs61088649	0.98[ASN][1000 genomes]
rs61306561	0.81[ASN][1000 genomes]
rs61376194	0.91[ASN][1000 genomes]
rs6460159	1.00[CEU][hapmap];0.83[YRI][hapmap];0.88[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6460160	0.83[AFR][1000 genomes]
rs6950743	0.81[CEU][hapmap]
rs6952263	0.88[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs6957579	0.95[CEU][hapmap];0.83[YRI][hapmap];0.84[AFR][1000 genomes]
rs72503385	0.83[ASN][1000 genomes]
rs73355704	0.83[ASN][1000 genomes]
rs73355715	0.96[ASN][1000 genomes]
rs7456018	0.83[AFR][1000 genomes]
rs7787566	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7790689	0.85[JPT][hapmap]
rs912161	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888255	chr7:63175168-63990100	Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
2	nsv888259	chr7:63363001-64009193	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
3	nsv1016466	chr7:63438466-63969492	ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
4	nsv429759	chr7:63662150-64110550	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv429760	chr7:63687850-64110550	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	esv2422405	chr7:63709739-64632341	Enhancers Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
7	nsv427787	chr7:63741770-64419520	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
8	nsv429761	chr7:63747498-64096138	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
9	esv2764000	chr7:63766980-64275251	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
10	nsv429762	chr7:63790450-64110550	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
11	esv2755057	chr7:63819849-64345822	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
12	nsv1031703	chr7:63839601-64225952	Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
13	nsv464518	chr7:63881238-64506904	Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
14	nsv607312	chr7:63881238-64506904	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
15	nsv1019403	chr7:63913361-63962134	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	esv2761104	chr7:63932053-63959013	ZNF genes & repeats Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	nsv1023042	chr7:63956027-64116232	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:63956000-63966200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr7:63956200-63960000	Weak transcription	Brain Substantia Nigra	brain
3	chr7:63956200-63961000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr7:63956200-63968800	Weak transcription	Ovary	ovary
5	chr7:63956600-63966200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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