Variant report

Variant	rs73355715
Chromosome Location	chr7:63985577-63985578
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1018581	0.83[ASN][1000 genomes]
rs10266644	0.82[ASN][1000 genomes]
rs10272999	0.94[ASN][1000 genomes]
rs10279359	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11973673	0.91[ASN][1000 genomes]
rs11979336	0.96[ASN][1000 genomes]
rs12674124	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13229310	0.94[ASN][1000 genomes]
rs17146392	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17540510	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2127039	0.92[ASN][1000 genomes]
rs28620773	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2862880	0.81[ASN][1000 genomes]
rs35712020	0.82[ASN][1000 genomes]
rs4717194	0.82[ASN][1000 genomes]
rs4717195	0.85[ASN][1000 genomes]
rs4717201	0.82[ASN][1000 genomes]
rs57323647	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57553713	0.82[ASN][1000 genomes]
rs57810730	0.87[ASN][1000 genomes]
rs59243255	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59617471	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61046711	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs61088649	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61306561	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61376194	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs72503385	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs72503386	0.82[ASN][1000 genomes]
rs72503388	0.82[ASN][1000 genomes]
rs73355704	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888255	chr7:63175168-63990100	Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
2	nsv888259	chr7:63363001-64009193	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
3	nsv429759	chr7:63662150-64110550	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv429760	chr7:63687850-64110550	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	esv2422405	chr7:63709739-64632341	Enhancers Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
6	nsv427787	chr7:63741770-64419520	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
7	nsv429761	chr7:63747498-64096138	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
8	esv2764000	chr7:63766980-64275251	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
9	nsv429762	chr7:63790450-64110550	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
10	esv2755057	chr7:63819849-64345822	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
11	nsv1031703	chr7:63839601-64225952	Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
12	nsv464518	chr7:63881238-64506904	Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
13	nsv607312	chr7:63881238-64506904	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
14	nsv1023042	chr7:63956027-64116232	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
15	nsv970855	chr7:63959414-64023731	ZNF genes & repeats Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
16	nsv888271	chr7:63961212-64295884	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
17	nsv888272	chr7:63973216-64004876	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
18	esv1833009	chr7:63980233-64002859	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:63964600-63997800	ZNF genes & repeats	Liver	Liver
2	chr7:63965000-63994800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr7:63966200-63997400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr7:63967600-63989600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
5	chr7:63968800-63988200	ZNF genes & repeats	Dnd41	blood
6	chr7:63970400-63988200	Weak transcription	Hela-S3	cervix
7	chr7:63974400-64020000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr7:63976400-63988400	Weak transcription	Pancreas	Pancrea
9	chr7:63978000-63989600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr7:63978200-64022200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:63979000-63989800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
12	chr7:63979800-63987600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
13	chr7:63980000-63987200	Weak transcription	Fetal Thymus	thymus
14	chr7:63980400-63986000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
15	chr7:63981000-63991000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
16	chr7:63981400-63991000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr7:63982000-63986600	Weak transcription	Left Ventricle	heart
18	chr7:63982000-63987200	Weak transcription	Aorta	Aorta
19	chr7:63982000-64001800	Weak transcription	NH-A	brain
20	chr7:63982200-63989600	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
21	chr7:63982400-63988000	Weak transcription	Brain Cingulate Gyrus	brain
22	chr7:63982600-63986800	Weak transcription	Ovary	ovary
23	chr7:63982600-63986800	Weak transcription	Right Ventricle	heart
24	chr7:63982600-63987600	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr7:63982600-63988000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr7:63982600-63988000	Weak transcription	Colonic Mucosa	Colon
27	chr7:63982800-63985600	Weak transcription	Fetal Kidney	kidney
28	chr7:63982800-63985600	Weak transcription	NHDF-Ad	bronchial
29	chr7:63982800-63986200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr7:63982800-63986200	Strong transcription	Osteobl	bone
31	chr7:63982800-63987400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr7:63982800-63988000	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr7:63982800-63988000	Weak transcription	Stomach Smooth Muscle	stomach
34	chr7:63983000-63986200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr7:63983000-63986600	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr7:63983200-63985800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr7:63983400-63986600	Weak transcription	Fetal Brain Female	brain
38	chr7:63983400-63988000	Weak transcription	HUVEC	blood vessel
39	chr7:63983400-63988000	Weak transcription	K562	blood
40	chr7:63983800-63986200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr7:63983800-63986600	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr7:63983800-63990800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr7:63984000-63985600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr7:63984200-63990400	ZNF genes & repeats	Adipose Nuclei	Adipose
45	chr7:63984400-63986000	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
46	chr7:63984400-63987400	Weak transcription	Psoas Muscle	Psoas
47	chr7:63984400-63988000	Weak transcription	Brain Hippocampus Middle	brain
48	chr7:63984400-63989400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr7:63984400-63990800	ZNF genes & repeats	Primary B cells from cord blood	blood
50	chr7:63984400-63992800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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