Variant report

Variant	rs11979489
Chromosome Location	chr7:65749973-65749974
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10081219	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10215888	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10232498	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10234562	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10236404	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10246941	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10247708	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10256705	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10264237	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10266831	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10272408	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11505274	0.87[ASW][hapmap];1.00[MEX][hapmap];0.84[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11971942	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12112556	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28368329	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28447397	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28460479	1.00[AMR][1000 genomes]
rs28566023	0.90[LWK][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28658294	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55983755	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61593141	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61603694	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73699720	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73699756	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73699843	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532124	chr7:65371521-66234730	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
2	nsv1026559	chr7:65617368-66370805	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
3	nsv1028692	chr7:65673136-65751069	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv538908	chr7:65673136-65751069	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv508458	chr7:65724222-65842639	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv1034195	chr7:65743409-65828266	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:65740800-65751400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:65745200-65751200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:65747200-65754000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr7:65747800-65766600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr7:65748000-65751400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr7:65748200-65751200	Weak transcription	Aorta	Aorta
7	chr7:65748400-65762000	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr7:65748600-65750000	Weak transcription	HepG2	liver
9	chr7:65749000-65750400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr7:65749000-65751400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr7:65749000-65751600	Weak transcription	Rectal Smooth Muscle	rectum
12	chr7:65749000-65761000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr7:65749200-65750200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr7:65749200-65751000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr7:65749200-65758200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr7:65749200-65760400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr7:65749200-65760400	Weak transcription	HMEC	breast
18	chr7:65749200-65760400	Weak transcription	Osteobl	bone
19	chr7:65749200-65760800	Weak transcription	HSMM	muscle
20	chr7:65749400-65751000	Weak transcription	NHDF-Ad	bronchial
21	chr7:65749600-65750000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links