Variant report

Variant	rs10215888
Chromosome Location	chr7:65970330-65970331
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:65957371..65960292-chr7:65968107..65970885,2	MCF-7	breast:
2	chr7:65967192..65970542-chr7:65973733..65976638,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000237310	Chromatin interaction
ENSG00000223473	Chromatin interaction
ENSG00000234500	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10236404	1.00[EUR][1000 genomes]
rs10246941	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10256705	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10264237	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10266831	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10272408	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10279154	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11505274	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11972532	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11979489	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11980472	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28368329	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28525579	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28649220	1.00[EUR][1000 genomes]
rs28658294	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28671466	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58669678	1.00[EUR][1000 genomes]
rs59775164	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61593141	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61603694	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73699843	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73702140	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532124	chr7:65371521-66234730	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
2	nsv1026559	chr7:65617368-66370805	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
3	nsv1035107	chr7:65814901-66114919	Genic enhancers Strong transcription ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
4	nsv538909	chr7:65814901-66114919	Strong transcription Weak transcription Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
5	nsv888326	chr7:65825257-66066999	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
6	nsv482441	chr7:65885824-66061788	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
7	nsv1027068	chr7:65901543-65991211	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
8	esv3447484	chr7:65909457-66033145	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
9	esv3377926	chr7:65934493-66051484	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
10	nsv888327	chr7:65938980-66029429	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
11	esv3423847	chr7:65941210-66054107	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:65959400-65970600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr7:65959400-65971000	Weak transcription	Right Atrium	heart
3	chr7:65959600-65970800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr7:65959600-65970800	Weak transcription	Brain Angular Gyrus	brain
5	chr7:65959600-65970800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr7:65959800-65970800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr7:65959800-65970800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr7:65967800-65970800	Weak transcription	NHLF	lung
9	chr7:65968000-65970800	Weak transcription	Ovary	ovary
10	chr7:65969000-65970800	Weak transcription	Gastric	stomach
11	chr7:65969000-65971800	Weak transcription	HepG2	liver
12	chr7:65969600-65970800	Bivalent Enhancer	Placenta	Placenta
13	chr7:65970000-65971200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr7:65970200-65970800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr7:65970200-65971000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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