Variant report

Variant	rs10279154
Chromosome Location	chr7:66087733-66087734
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:66086058..66091828-chr7:66092043..66096410,8	K562	blood:
2	chr7:66086645..66090963-chr7:66091966..66094682,7	K562	blood:
3	chr7:66085871..66088222-chr7:66108390..66110154,2	K562	blood:
4	chr7:66087482..66091666-chr7:66091713..66095048,5	MCF-7	breast:
5	chr7:66087143..66089871-chr7:66091629..66094110,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000243335	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10215888	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10236404	1.00[EUR][1000 genomes]
rs10244204	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10248036	1.00[EUR][1000 genomes]
rs10264237	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10266166	1.00[EUR][1000 genomes]
rs11505274	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11972532	1.00[AMR][1000 genomes]
rs11980472	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28368329	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28525579	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28619031	1.00[EUR][1000 genomes]
rs28649220	1.00[EUR][1000 genomes]
rs28658294	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28671466	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58669678	1.00[EUR][1000 genomes]
rs59775164	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61593141	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61603694	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73699843	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73700311	1.00[EUR][1000 genomes]
rs73702140	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532124	chr7:65371521-66234730	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
2	nsv1026559	chr7:65617368-66370805	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
3	nsv1035107	chr7:65814901-66114919	Genic enhancers Strong transcription ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
4	nsv538909	chr7:65814901-66114919	Strong transcription Weak transcription Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66085000-66090800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr7:66085200-66090200	Weak transcription	HepG2	liver
3	chr7:66085600-66089800	Weak transcription	Placenta	Placenta
4	chr7:66086800-66092800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:66087600-66092200	Weak transcription	K562	blood
6	chr7:66087600-66092800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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