Variant report
| Variant | rs11980883 |
|---|---|
| Chromosome Location | chr7:38747132-38747133 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000006715 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10242807 | 0.91[ASN][1000 genomes] |
| rs10243110 | 0.83[ASN][1000 genomes] |
| rs10252285 | 0.93[ASN][1000 genomes] |
| rs10262154 | 0.95[ASN][1000 genomes] |
| rs10267709 | 0.88[ASN][1000 genomes] |
| rs10277549 | 0.91[ASN][1000 genomes] |
| rs10279367 | 0.95[ASN][1000 genomes] |
| rs10281589 | 0.88[ASN][1000 genomes] |
| rs11773094 | 0.95[ASN][1000 genomes] |
| rs17617903 | 0.93[ASN][1000 genomes] |
| rs17679853 | 0.93[ASN][1000 genomes] |
| rs2286078 | 0.81[ASN][1000 genomes] |
| rs2286107 | 0.93[ASN][1000 genomes] |
| rs28520398 | 0.93[ASN][1000 genomes] |
| rs28635894 | 0.84[ASN][1000 genomes] |
| rs3779127 | 0.95[ASN][1000 genomes] |
| rs3779128 | 0.93[ASN][1000 genomes] |
| rs4610638 | 0.84[ASN][1000 genomes] |
| rs55924838 | 0.98[ASN][1000 genomes] |
| rs62444074 | 0.98[ASN][1000 genomes] |
| rs6462863 | 0.81[ASN][1000 genomes] |
| rs6956501 | 0.81[ASN][1000 genomes] |
| rs6956969 | 0.83[ASN][1000 genomes] |
| rs6973641 | 0.93[ASN][1000 genomes] |
| rs7803132 | 0.95[ASN][1000 genomes] |
| rs976353 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv887965 | chr7:38706384-38793243 | Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs11980883 | VPS41 | Cis_1M | lymphoblastoid | RTeQTL |
Chromatin state (count:0 , 50 per page) page:
| No data |
