Variant report

Variant	rs10242807
Chromosome Location	chr7:38801614-38801615
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10229531	0.82[CHB][hapmap]
rs10243110	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10245322	0.82[CHB][hapmap]
rs10250120	0.82[CHB][hapmap]
rs10252285	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10254617	0.85[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs10262154	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10267709	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10268253	0.86[ASN][1000 genomes]
rs10277549	1.00[ASN][1000 genomes]
rs10279367	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10279990	0.82[CHB][hapmap]
rs10281589	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10281823	0.82[CHB][hapmap]
rs10951578	0.82[CHB][hapmap]
rs1155507	0.85[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs1155513	0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs11765467	0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs11773094	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11980534	0.89[YRI][hapmap]
rs11980883	0.91[ASN][1000 genomes]
rs12672018	0.82[CHB][hapmap]
rs13237387	0.82[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs1468347	0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs17617903	0.95[ASN][1000 genomes]
rs17679853	0.95[ASN][1000 genomes]
rs2067683	0.82[CHB][hapmap]
rs2286078	1.00[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs2286080	0.85[CHB][hapmap];0.89[JPT][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2286107	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2392600	0.86[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs28520398	0.95[ASN][1000 genomes]
rs28635894	0.93[ASN][1000 genomes]
rs3213659	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs34276565	0.85[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs3735346	0.82[CHB][hapmap]
rs3779125	0.82[CHB][hapmap]
rs3779127	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3779128	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs3801111	0.82[CHB][hapmap]
rs3801113	0.82[CHB][hapmap]
rs3801115	0.82[CHB][hapmap]
rs3801116	0.82[CHB][hapmap]
rs3801119	0.82[CHB][hapmap]
rs4236355	0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs4610638	0.88[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4720303	0.85[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs4723789	0.85[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs55924838	0.93[ASN][1000 genomes]
rs62444074	0.93[ASN][1000 genomes]
rs6462863	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6462864	0.85[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs6462865	0.85[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs6943746	0.82[CHB][hapmap]
rs6956501	0.89[ASN][1000 genomes]
rs6956969	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6957565	0.85[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs6973641	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7777039	0.86[ASN][1000 genomes]
rs7782927	0.82[CHB][hapmap]
rs7803132	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7812184	0.83[YRI][hapmap]
rs917320	0.82[CHB][hapmap]
rs917321	0.82[CHB][hapmap]
rs9655397	0.82[CHB][hapmap]
rs976353	0.85[CHB][hapmap];0.90[JPT][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38749000-38803600	Weak transcription	Fetal Brain Male	brain
2	chr7:38757200-38835400	Weak transcription	Psoas Muscle	Psoas
3	chr7:38759200-38810200	Weak transcription	A549	lung
4	chr7:38759400-38810600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr7:38761000-38820400	Weak transcription	Stomach Mucosa	stomach
6	chr7:38763200-38828000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr7:38763400-38828800	Weak transcription	HepG2	liver
8	chr7:38765400-38802800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr7:38767200-38802800	Weak transcription	Right Ventricle	heart
10	chr7:38767200-38805800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr7:38774800-38816800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr7:38775800-38816600	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr7:38780800-38803600	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr7:38780800-38806000	Weak transcription	Fetal Brain Female	brain
15	chr7:38780800-38828800	Weak transcription	Gastric	stomach
16	chr7:38781400-38805800	Weak transcription	Brain Substantia Nigra	brain
17	chr7:38784400-38805800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr7:38784600-38805800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr7:38784800-38835000	Weak transcription	NHEK	skin
20	chr7:38785000-38815800	Weak transcription	NHLF	lung
21	chr7:38785600-38834600	Weak transcription	HMEC	breast
22	chr7:38785600-38835000	Weak transcription	NH-A	brain
23	chr7:38786600-38805800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr7:38786600-38805800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr7:38786600-38806000	Weak transcription	Brain Cingulate Gyrus	brain
26	chr7:38787000-38827400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr7:38789000-38818800	Strong transcription	Primary B cells from peripheral blood	blood
28	chr7:38789600-38811000	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr7:38789600-38816800	Strong transcription	Primary T cells fromperipheralblood	blood
30	chr7:38791200-38802600	Weak transcription	Brain Anterior Caudate	brain
31	chr7:38791400-38812600	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr7:38791800-38813400	Weak transcription	Osteobl	bone
33	chr7:38791800-38814200	Weak transcription	K562	blood
34	chr7:38792000-38802200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr7:38792000-38802800	Weak transcription	Fetal Thymus	thymus
36	chr7:38792000-38810800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr7:38792000-38812600	Weak transcription	Brain Germinal Matrix	brain
38	chr7:38792200-38802400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr7:38792200-38803600	Weak transcription	Thymus	Thymus
40	chr7:38792200-38828000	Weak transcription	Colon Smooth Muscle	Colon
41	chr7:38792400-38821800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
42	chr7:38793200-38802800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr7:38793200-38802800	Weak transcription	Colonic Mucosa	Colon
44	chr7:38793200-38805800	Weak transcription	Spleen	Spleen
45	chr7:38793200-38806200	Weak transcription	HSMMtube	muscle
46	chr7:38793200-38818200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr7:38793400-38803600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr7:38793400-38803800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr7:38793400-38803800	Weak transcription	Esophagus	oesophagus
50	chr7:38793400-38828600	Weak transcription	Small Intestine	intestine

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