The 2.0 version of rSNPBase

Variant report

Variant rs2392600
Chromosome Location chr7:38816715-38816716
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:117 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr7:38757200-38835400 Weak transcription Psoas Muscle Psoas
2 chr7:38761000-38820400 Weak transcription Stomach Mucosa stomach
3 chr7:38763200-38828000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
4 chr7:38763400-38828800 Weak transcription HepG2 liver
5 chr7:38774800-38816800 Strong transcription Primary Natural Killer cells fromperipheralblood blood
6 chr7:38780800-38828800 Weak transcription Gastric stomach
7 chr7:38784800-38835000 Weak transcription NHEK skin
8 chr7:38785600-38834600 Weak transcription HMEC breast
9 chr7:38785600-38835000 Weak transcription NH-A brain
10 chr7:38787000-38827400 Weak transcription Primary T helper naive cells from peripheral blood blood
11 chr7:38789000-38818800 Strong transcription Primary B cells from peripheral blood blood
12 chr7:38789600-38816800 Strong transcription Primary T cells fromperipheralblood blood
13 chr7:38792200-38828000 Weak transcription Colon Smooth Muscle Colon
14 chr7:38792400-38821800 Weak transcription ES-WA7 Cell Line embryonic stem cell
15 chr7:38793200-38818200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
16 chr7:38793400-38828600 Weak transcription Small Intestine intestine
17 chr7:38793400-38861200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
18 chr7:38793600-38832600 Weak transcription Brain Angular Gyrus brain
19 chr7:38798200-38828800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
20 chr7:38800200-38837600 Weak transcription H9 Cell Line embryonic stem cell
21 chr7:38801000-38818400 Strong transcription Monocytes-CD14+_RO01746 blood
22 chr7:38801600-38817600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
23 chr7:38803200-38845400 Weak transcription Colonic Mucosa Colon
24 chr7:38803200-38846000 Weak transcription Primary T killer memory cells from peripheral blood blood
25 chr7:38804400-38836200 Weak transcription Fetal Brain Male brain
26 chr7:38806200-38827200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
27 chr7:38806200-38828800 Weak transcription Pancreas Pancrea
28 chr7:38806400-38827600 Weak transcription Brain Inferior Temporal Lobe brain
29 chr7:38806600-38828800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
30 chr7:38806800-38821600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
31 chr7:38806800-38828400 Weak transcription Fetal Lung lung
32 chr7:38806800-38828800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
33 chr7:38806800-38828800 Weak transcription Brain Substantia Nigra brain
34 chr7:38806800-38828800 Weak transcription Esophagus oesophagus
35 chr7:38806800-38828800 Weak transcription Thymus Thymus
36 chr7:38806800-38828800 Weak transcription Spleen Spleen
37 chr7:38806800-38832800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
38 chr7:38809000-38827600 Weak transcription Brain Cingulate Gyrus brain
39 chr7:38809200-38828600 Weak transcription Brain Anterior Caudate brain
40 chr7:38809400-38821600 Weak transcription Fetal Intestine Small intestine
41 chr7:38809600-38822400 Weak transcription Fetal Stomach stomach
42 chr7:38811000-38818600 Strong transcription Primary B cells from cord blood blood
43 chr7:38811600-38818600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
44 chr7:38812000-38817000 Strong transcription Primary neutrophils fromperipheralblood blood
45 chr7:38812600-38831400 Weak transcription A549 lung
46 chr7:38812800-38825600 Weak transcription Rectal Mucosa Donor 31 rectum
47 chr7:38812800-38834800 Weak transcription HSMMtube muscle
48 chr7:38813000-38819800 Weak transcription Lung lung
49 chr7:38813000-38828800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
50 chr7:38813600-38816800 Enhancers Pancreatic Islets Pancreatic Islet

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Last update: Aug 31, 2015