Variant report

Variant	rs4723798
Chromosome Location	chr7:38854897-38854898
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10085898	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10249090	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10254617	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10951576	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1155513	0.94[EUR][1000 genomes]
rs11765467	0.91[EUR][1000 genomes]
rs12533017	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12533808	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13237387	0.93[EUR][1000 genomes]
rs1468347	0.91[EUR][1000 genomes]
rs1473138	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1473139	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17618395	0.81[ASN][1000 genomes]
rs2072248	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2159018	0.83[ASN][1000 genomes]
rs2286080	0.95[EUR][1000 genomes]
rs2392600	0.91[EUR][1000 genomes]
rs2392601	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2392602	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34276565	0.93[EUR][1000 genomes]
rs35548426	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3779124	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3801132	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3801134	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4236355	0.95[EUR][1000 genomes]
rs4610638	0.95[EUR][1000 genomes]
rs4720306	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4723789	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4723791	0.81[ASN][1000 genomes]
rs4723792	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4723795	0.83[ASN][1000 genomes]
rs4723796	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4723800	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6415270	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6462864	0.88[EUR][1000 genomes]
rs6462868	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6462869	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6462870	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6946636	0.83[ASN][1000 genomes]
rs6957565	0.91[EUR][1000 genomes]
rs6963364	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6968196	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6969435	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6979578	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7798033	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7811383	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs929422	0.83[ASN][1000 genomes]
rs9639805	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs976353	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032637	chr7:38832627-38902723	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv887966	chr7:38835035-38933942	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38793400-38861200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr7:38813800-38857400	Weak transcription	HSMM	muscle
3	chr7:38822400-38855200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:38829400-38855200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr7:38829400-38855600	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr7:38829400-38856400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr7:38829400-38864400	Weak transcription	Thymus	Thymus
8	chr7:38829400-38864600	Weak transcription	NHLF	lung
9	chr7:38831000-38871200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr7:38831800-38856800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr7:38831800-38856800	Weak transcription	Pancreas	Pancrea
12	chr7:38831800-38857000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr7:38831800-38867800	Weak transcription	Fetal Thymus	thymus
14	chr7:38832000-38855600	Weak transcription	Dnd41	blood
15	chr7:38832000-38857400	Weak transcription	Lung	lung
16	chr7:38832400-38855200	Weak transcription	Fetal Intestine Small	intestine
17	chr7:38832800-38857000	Weak transcription	Esophagus	oesophagus
18	chr7:38833400-38857000	Weak transcription	Duodenum Mucosa	Duodenum
19	chr7:38833400-38859400	Weak transcription	Spleen	Spleen
20	chr7:38833600-38857000	Weak transcription	Aorta	Aorta
21	chr7:38833600-38857200	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr7:38834400-38863400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr7:38835200-38855200	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr7:38835200-38855600	Weak transcription	Fetal Intestine Large	intestine
25	chr7:38835200-38857000	Weak transcription	Fetal Lung	lung
26	chr7:38835200-38865200	Weak transcription	Rectal Smooth Muscle	rectum
27	chr7:38835400-38855200	Weak transcription	Liver	Liver
28	chr7:38835400-38857000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr7:38835600-38856400	Weak transcription	Stomach Smooth Muscle	stomach
30	chr7:38835600-38857400	Weak transcription	Ovary	ovary
31	chr7:38835600-38857600	Weak transcription	Adipose Nuclei	Adipose
32	chr7:38835600-38862200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr7:38835600-38900800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr7:38835800-38855600	Weak transcription	HSMMtube	muscle
35	chr7:38835800-38856200	Weak transcription	GM12878-XiMat	blood
36	chr7:38835800-38856800	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr7:38835800-38858600	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr7:38836200-38856200	Weak transcription	Placenta	Placenta
39	chr7:38836400-38855400	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr7:38836400-38855600	Weak transcription	Primary T cells from cord blood	blood
41	chr7:38836400-38855600	Weak transcription	Primary hematopoietic stem cells	blood
42	chr7:38836400-38855600	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr7:38836400-38857400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr7:38839800-38856800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr7:38839800-38871000	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr7:38841000-38858200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr7:38842000-38865400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr7:38844800-38855800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr7:38846800-38855800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr7:38847000-38856800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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