Variant report

Variant	rs2286080
Chromosome Location	chr7:38818131-38818132
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10085898	0.96[CEU][hapmap];0.85[CHB][hapmap];0.89[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10242807	0.85[CHB][hapmap];0.89[JPT][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs10243110	0.85[CHB][hapmap];0.89[JPT][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10249090	0.91[CEU][hapmap];0.82[CHB][hapmap];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10252285	0.85[CHB][hapmap];0.89[JPT][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10254617	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10262154	0.85[CHB][hapmap];0.95[CHD][hapmap];0.89[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.94[YRI][hapmap];0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10267709	0.91[ASN][1000 genomes]
rs10268253	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10274968	0.85[CHB][hapmap]
rs10277549	0.88[ASN][1000 genomes]
rs10279367	0.85[CHB][hapmap];0.95[CHD][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs10281589	0.85[CHB][hapmap];0.89[JPT][hapmap];0.94[YRI][hapmap];0.92[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs10951576	0.96[CEU][hapmap];0.85[CHB][hapmap];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1155507	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1155513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11765467	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11773094	0.85[CHB][hapmap];0.95[CHD][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs11980534	0.82[YRI][hapmap]
rs11980627	0.85[CHB][hapmap]
rs12533017	0.95[CEU][hapmap];0.85[CHB][hapmap];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12533808	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13228087	0.85[CHB][hapmap]
rs13237387	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1468347	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.89[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1473138	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1473139	0.96[CEU][hapmap];0.85[CHB][hapmap];0.97[EUR][1000 genomes]
rs17617903	0.83[ASN][1000 genomes]
rs17618395	0.83[GIH][hapmap];0.89[MEX][hapmap];0.89[TSI][hapmap];0.82[ASN][1000 genomes]
rs17679853	0.83[ASN][1000 genomes]
rs2072248	0.92[CEU][hapmap];0.85[CHB][hapmap];0.89[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2159018	0.85[CHB][hapmap];0.81[ASN][1000 genomes]
rs2189853	0.85[CHB][hapmap];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2286078	0.85[CHB][hapmap];0.95[ASN][1000 genomes]
rs2286107	0.85[CHB][hapmap];0.89[JPT][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2392600	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2392601	0.96[CEU][hapmap];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2392602	0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28520398	0.83[ASN][1000 genomes]
rs28635894	0.95[ASN][1000 genomes]
rs3213659	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs34276565	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35548426	0.92[EUR][1000 genomes]
rs3779124	0.97[EUR][1000 genomes]
rs3779127	0.85[CHB][hapmap];0.95[CHD][hapmap];0.89[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.94[YRI][hapmap];0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs3779128	0.82[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs3801126	0.85[CHB][hapmap]
rs3801127	0.85[CHB][hapmap]
rs3801132	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3801134	0.92[CEU][hapmap];0.85[CHB][hapmap];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4236355	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4610638	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4720303	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4720306	0.93[EUR][1000 genomes]
rs4723789	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4723791	0.82[ASN][1000 genomes]
rs4723792	0.96[CEU][hapmap];0.85[CHB][hapmap];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4723795	0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs4723796	0.92[CEU][hapmap];0.85[CHB][hapmap];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4723798	0.95[EUR][1000 genomes]
rs4723800	0.92[CEU][hapmap];0.85[CHB][hapmap];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55924838	0.81[ASN][1000 genomes]
rs62444074	0.81[ASN][1000 genomes]
rs62444126	0.80[ASN][1000 genomes]
rs6415270	0.96[CEU][hapmap];0.85[CHB][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6462863	0.89[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs6462864	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.84[TSI][hapmap];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6462865	1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.84[TSI][hapmap];0.98[ASN][1000 genomes]
rs6462868	0.96[CEU][hapmap];0.85[CHB][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6462869	0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6462870	0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6946636	0.85[CHB][hapmap];0.83[GIH][hapmap];0.89[MEX][hapmap];0.89[TSI][hapmap];0.81[ASN][1000 genomes]
rs6948026	0.85[CHB][hapmap]
rs6955677	0.85[CHB][hapmap]
rs6956501	0.95[ASN][1000 genomes]
rs6956969	0.92[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs6957565	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6963364	0.92[CEU][hapmap];0.85[CHB][hapmap];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6968196	0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6969435	0.96[CEU][hapmap];0.85[CHB][hapmap];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6973415	0.85[CHB][hapmap]
rs6973641	0.82[CHB][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs6979578	0.91[EUR][1000 genomes]
rs7777039	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7793692	0.82[CHB][hapmap]
rs7798033	0.92[CEU][hapmap];0.85[CHB][hapmap];0.80[GIH][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes]
rs7803132	0.85[CHB][hapmap];0.95[CHD][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs7811383	0.97[EUR][1000 genomes]
rs917322	0.85[CHB][hapmap]
rs929422	0.81[ASN][1000 genomes]
rs9639805	0.92[CEU][hapmap];0.85[CHB][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs976353	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs982392	0.85[CHB][hapmap]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38757200-38835400	Weak transcription	Psoas Muscle	Psoas
2	chr7:38761000-38820400	Weak transcription	Stomach Mucosa	stomach
3	chr7:38763200-38828000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr7:38763400-38828800	Weak transcription	HepG2	liver
5	chr7:38780800-38828800	Weak transcription	Gastric	stomach
6	chr7:38784800-38835000	Weak transcription	NHEK	skin
7	chr7:38785600-38834600	Weak transcription	HMEC	breast
8	chr7:38785600-38835000	Weak transcription	NH-A	brain
9	chr7:38787000-38827400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr7:38789000-38818800	Strong transcription	Primary B cells from peripheral blood	blood
11	chr7:38792200-38828000	Weak transcription	Colon Smooth Muscle	Colon
12	chr7:38792400-38821800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr7:38793200-38818200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr7:38793400-38828600	Weak transcription	Small Intestine	intestine
15	chr7:38793400-38861200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr7:38793600-38832600	Weak transcription	Brain Angular Gyrus	brain
17	chr7:38798200-38828800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr7:38800200-38837600	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr7:38801000-38818400	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr7:38803200-38845400	Weak transcription	Colonic Mucosa	Colon
21	chr7:38803200-38846000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr7:38804400-38836200	Weak transcription	Fetal Brain Male	brain
23	chr7:38806200-38827200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr7:38806200-38828800	Weak transcription	Pancreas	Pancrea
25	chr7:38806400-38827600	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr7:38806600-38828800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr7:38806800-38821600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr7:38806800-38828400	Weak transcription	Fetal Lung	lung
29	chr7:38806800-38828800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr7:38806800-38828800	Weak transcription	Brain Substantia Nigra	brain
31	chr7:38806800-38828800	Weak transcription	Esophagus	oesophagus
32	chr7:38806800-38828800	Weak transcription	Thymus	Thymus
33	chr7:38806800-38828800	Weak transcription	Spleen	Spleen
34	chr7:38806800-38832800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr7:38809000-38827600	Weak transcription	Brain Cingulate Gyrus	brain
36	chr7:38809200-38828600	Weak transcription	Brain Anterior Caudate	brain
37	chr7:38809400-38821600	Weak transcription	Fetal Intestine Small	intestine
38	chr7:38809600-38822400	Weak transcription	Fetal Stomach	stomach
39	chr7:38811000-38818600	Strong transcription	Primary B cells from cord blood	blood
40	chr7:38811600-38818600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr7:38812600-38831400	Weak transcription	A549	lung
42	chr7:38812800-38825600	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr7:38812800-38834800	Weak transcription	HSMMtube	muscle
44	chr7:38813000-38819800	Weak transcription	Lung	lung
45	chr7:38813000-38828800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr7:38813600-38821800	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr7:38813600-38822400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr7:38813600-38827600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr7:38813600-38828800	Weak transcription	Fetal Muscle Trunk	muscle
50	chr7:38813800-38821400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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