Variant report

Variant	rs7811383
Chromosome Location	chr7:38861263-38861264
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:38857572..38859924-chr7:38860336..38863164,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10085898	0.97[EUR][1000 genomes]
rs10249090	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10254617	0.97[EUR][1000 genomes]
rs10951576	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1155513	0.96[EUR][1000 genomes]
rs11765467	0.93[EUR][1000 genomes]
rs12533017	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12533808	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13237387	0.94[EUR][1000 genomes]
rs1468347	0.93[EUR][1000 genomes]
rs1473138	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1473139	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2072248	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2286080	0.97[EUR][1000 genomes]
rs2392600	0.93[EUR][1000 genomes]
rs2392601	0.93[EUR][1000 genomes]
rs2392602	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34276565	0.94[EUR][1000 genomes]
rs35548426	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3779124	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3801132	0.91[EUR][1000 genomes]
rs3801134	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4236355	0.96[EUR][1000 genomes]
rs4610638	0.97[EUR][1000 genomes]
rs4720306	0.92[EUR][1000 genomes]
rs4723789	0.98[EUR][1000 genomes]
rs4723792	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4723796	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4723798	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4723800	0.93[EUR][1000 genomes]
rs6415270	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6462864	0.90[EUR][1000 genomes]
rs6462868	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6462869	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6462870	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6957565	0.92[EUR][1000 genomes]
rs6963364	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6968196	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6969435	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6979578	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7798033	0.91[EUR][1000 genomes]
rs9639805	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs976353	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032637	chr7:38832627-38902723	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv887966	chr7:38835035-38933942	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38829400-38864400	Weak transcription	Thymus	Thymus
2	chr7:38829400-38864600	Weak transcription	NHLF	lung
3	chr7:38831000-38871200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr7:38831800-38867800	Weak transcription	Fetal Thymus	thymus
5	chr7:38834400-38863400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:38835200-38865200	Weak transcription	Rectal Smooth Muscle	rectum
7	chr7:38835600-38862200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr7:38835600-38900800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr7:38839800-38871000	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr7:38842000-38865400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr7:38847400-38869800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr7:38847800-38862400	Weak transcription	Brain Angular Gyrus	brain
13	chr7:38847800-38866800	Weak transcription	Brain Substantia Nigra	brain
14	chr7:38848200-38861800	Weak transcription	Brain Anterior Caudate	brain
15	chr7:38850200-38865400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr7:38850600-38869600	Weak transcription	Stomach Mucosa	stomach
17	chr7:38851600-38867000	Weak transcription	Gastric	stomach
18	chr7:38851800-38862200	Weak transcription	K562	blood
19	chr7:38853000-38863600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr7:38854000-38870400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr7:38854400-38861400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr7:38855400-38865400	Weak transcription	Osteobl	bone
23	chr7:38855600-38863200	Strong transcription	Primary B cells from cord blood	blood
24	chr7:38855600-38871000	Weak transcription	HepG2	liver
25	chr7:38856000-38865200	Weak transcription	NHDF-Ad	bronchial
26	chr7:38856000-38871000	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr7:38856200-38865400	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr7:38856200-38871200	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr7:38856800-38865000	Weak transcription	GM12878-XiMat	blood
30	chr7:38856800-38865400	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr7:38857200-38863600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr7:38857200-38867200	Weak transcription	Esophagus	oesophagus
33	chr7:38857400-38862400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr7:38857400-38862600	Weak transcription	Fetal Muscle Trunk	muscle
35	chr7:38857600-38862000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr7:38857600-38862400	Weak transcription	Fetal Brain Female	brain
37	chr7:38857600-38862400	Weak transcription	A549	lung
38	chr7:38857600-38863600	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr7:38857600-38865200	Weak transcription	Placenta	Placenta
40	chr7:38857600-38865800	Weak transcription	HSMMtube	muscle
41	chr7:38857600-38871800	Weak transcription	Primary neutrophils fromperipheralblood	blood
42	chr7:38857800-38862400	Weak transcription	Fetal Muscle Leg	muscle
43	chr7:38857800-38863600	Weak transcription	Fetal Lung	lung
44	chr7:38857800-38865000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr7:38857800-38865200	Weak transcription	Colon Smooth Muscle	Colon
46	chr7:38858000-38862600	Weak transcription	Adipose Nuclei	Adipose
47	chr7:38858000-38862800	Weak transcription	Aorta	Aorta
48	chr7:38858000-38865600	Weak transcription	Liver	Liver
49	chr7:38858000-38870600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr7:38858200-38862000	Weak transcription	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links