Variant report

Variant	rs1468347
Chromosome Location	chr7:38816441-38816442
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs1001476	0.81[LWK][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes]
rs10085898	1.00[CEU][hapmap];0.89[GIH][hapmap];0.85[MEX][hapmap];0.89[TSI][hapmap];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10242807	0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs10243110	0.89[JPT][hapmap];0.96[ASN][1000 genomes]
rs10249090	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10252285	0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs10254617	0.86[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10262154	0.95[CHD][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs10267709	0.91[ASN][1000 genomes]
rs10268253	0.98[ASN][1000 genomes]
rs10277549	0.88[ASN][1000 genomes]
rs10279367	0.95[CHD][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs10281589	0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs10951576	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1155507	0.86[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1155513	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11765467	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11773094	0.95[CHD][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs12112141	0.93[YRI][hapmap];0.83[AFR][1000 genomes]
rs12533017	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12533808	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13237387	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1473138	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1473139	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1557941	0.81[LWK][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes]
rs17171465	0.93[YRI][hapmap];0.83[AFR][1000 genomes]
rs17617903	0.83[ASN][1000 genomes]
rs17618395	0.83[GIH][hapmap];0.82[ASN][1000 genomes]
rs17679853	0.83[ASN][1000 genomes]
rs2072248	0.96[CEU][hapmap];0.89[GIH][hapmap];0.85[MEX][hapmap];0.89[TSI][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2159018	0.81[ASN][1000 genomes]
rs2189853	0.84[ASN][1000 genomes]
rs2286078	0.95[ASN][1000 genomes]
rs2286080	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.89[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2286107	0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs2392600	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2392601	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2392602	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28520398	0.83[ASN][1000 genomes]
rs28635894	0.95[ASN][1000 genomes]
rs3213659	0.89[JPT][hapmap]
rs34276565	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35548426	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs3779124	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3779127	0.95[CHD][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs3779128	0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs3801132	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3801134	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4236355	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4610638	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4720303	0.86[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4720306	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4723789	0.93[ASW][hapmap];0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.90[MEX][hapmap];0.86[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4723791	0.82[ASN][1000 genomes]
rs4723792	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4723795	0.81[ASN][1000 genomes]
rs4723796	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4723798	0.91[EUR][1000 genomes]
rs4723800	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55924838	0.81[ASN][1000 genomes]
rs62444074	0.81[ASN][1000 genomes]
rs62444126	0.80[ASN][1000 genomes]
rs6415270	1.00[CEU][hapmap];0.92[GIH][hapmap];0.85[MEX][hapmap];0.89[TSI][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6462863	0.95[ASN][1000 genomes]
rs6462864	0.81[ASW][hapmap];0.96[CEU][hapmap];0.86[CHB][hapmap];0.89[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.80[MKK][hapmap];0.95[TSI][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6462865	0.86[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6462868	1.00[CEU][hapmap];0.88[GIH][hapmap];0.85[MEX][hapmap];0.89[TSI][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6462869	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6462870	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6946636	0.83[GIH][hapmap];0.81[ASN][1000 genomes]
rs6956501	0.95[ASN][1000 genomes]
rs6956969	0.96[ASN][1000 genomes]
rs6957565	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.84[MEX][hapmap];0.83[TSI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6963364	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6968196	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6969435	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6973641	0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs6979578	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7777039	0.98[ASN][1000 genomes]
rs7798033	0.96[CEU][hapmap];0.80[GIH][hapmap];0.90[MEX][hapmap];0.85[TSI][hapmap];0.88[EUR][1000 genomes]
rs7803132	0.95[CHD][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs7811383	0.93[EUR][1000 genomes]
rs929422	0.81[ASN][1000 genomes]
rs9639805	0.96[CEU][hapmap];0.92[GIH][hapmap];0.85[MEX][hapmap];0.89[TSI][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs976353	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38757200-38835400	Weak transcription	Psoas Muscle	Psoas
2	chr7:38761000-38820400	Weak transcription	Stomach Mucosa	stomach
3	chr7:38763200-38828000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr7:38763400-38828800	Weak transcription	HepG2	liver
5	chr7:38774800-38816800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr7:38775800-38816600	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr7:38780800-38828800	Weak transcription	Gastric	stomach
8	chr7:38784800-38835000	Weak transcription	NHEK	skin
9	chr7:38785600-38834600	Weak transcription	HMEC	breast
10	chr7:38785600-38835000	Weak transcription	NH-A	brain
11	chr7:38787000-38827400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr7:38789000-38818800	Strong transcription	Primary B cells from peripheral blood	blood
13	chr7:38789600-38816800	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr7:38792200-38828000	Weak transcription	Colon Smooth Muscle	Colon
15	chr7:38792400-38821800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr7:38793200-38818200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr7:38793400-38828600	Weak transcription	Small Intestine	intestine
18	chr7:38793400-38861200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr7:38793600-38832600	Weak transcription	Brain Angular Gyrus	brain
20	chr7:38798200-38828800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr7:38800200-38837600	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr7:38801000-38818400	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr7:38801600-38817600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr7:38802000-38816600	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr7:38802000-38816600	Strong transcription	Adipose Nuclei	Adipose
26	chr7:38803200-38845400	Weak transcription	Colonic Mucosa	Colon
27	chr7:38803200-38846000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr7:38804400-38836200	Weak transcription	Fetal Brain Male	brain
29	chr7:38805600-38816600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr7:38806200-38827200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr7:38806200-38828800	Weak transcription	Pancreas	Pancrea
32	chr7:38806400-38827600	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr7:38806600-38828800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr7:38806800-38821600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr7:38806800-38828400	Weak transcription	Fetal Lung	lung
36	chr7:38806800-38828800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr7:38806800-38828800	Weak transcription	Brain Substantia Nigra	brain
38	chr7:38806800-38828800	Weak transcription	Esophagus	oesophagus
39	chr7:38806800-38828800	Weak transcription	Thymus	Thymus
40	chr7:38806800-38828800	Weak transcription	Spleen	Spleen
41	chr7:38806800-38832800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr7:38808200-38816600	Strong transcription	Duodenum Mucosa	Duodenum
43	chr7:38809000-38827600	Weak transcription	Brain Cingulate Gyrus	brain
44	chr7:38809200-38828600	Weak transcription	Brain Anterior Caudate	brain
45	chr7:38809400-38816600	Strong transcription	Left Ventricle	heart
46	chr7:38809400-38821600	Weak transcription	Fetal Intestine Small	intestine
47	chr7:38809600-38822400	Weak transcription	Fetal Stomach	stomach
48	chr7:38811000-38818600	Strong transcription	Primary B cells from cord blood	blood
49	chr7:38811600-38816600	Strong transcription	Sigmoid Colon	Sigmoid Colon
50	chr7:38811600-38818600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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