Variant report

Variant	rs11981133
Chromosome Location	chr7:116528624-116528625
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:116521486..116524179-chr7:116528178..116530411,2	K562	blood:
2	chr7:116526034..116528635-chr7:116592304..116594745,2	MCF-7	breast:
3	chr7:116526210..116528791-chr7:116536125..116537832,2	K562	blood:

Variant related genes	Relation type
ENSG00000004866	Chromatin interaction
ENSG00000227199	Chromatin interaction
ENSG00000214188	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1060513	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1060514	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6952406	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6961375	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6967466	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7777997	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7780748	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7786948	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7790214	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7791219	0.87[AFR][1000 genomes]
rs7796146	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831107	chr7:116414734-116649466	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116503800-116554400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:116504400-116528800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr7:116504400-116533000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr7:116504600-116540800	Weak transcription	Fetal Kidney	kidney
5	chr7:116505000-116533600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr7:116505000-116537400	Weak transcription	Brain Germinal Matrix	brain
7	chr7:116506000-116529200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:116506000-116554600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr7:116511200-116528800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr7:116511400-116554600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr7:116512000-116545400	Weak transcription	NHLF	lung
12	chr7:116512200-116529400	Weak transcription	Osteobl	bone
13	chr7:116514400-116530600	Weak transcription	HMEC	breast
14	chr7:116514400-116531600	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr7:116514600-116537800	Weak transcription	NHEK	skin
16	chr7:116515400-116559200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr7:116516800-116551200	Weak transcription	Brain Angular Gyrus	brain
18	chr7:116517000-116529200	Weak transcription	NH-A	brain
19	chr7:116517200-116531000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr7:116517200-116531000	Weak transcription	Hela-S3	cervix
21	chr7:116517200-116533000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr7:116517200-116538000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr7:116517200-116554600	Weak transcription	Esophagus	oesophagus
24	chr7:116517600-116529000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr7:116517600-116556600	Weak transcription	Psoas Muscle	Psoas
26	chr7:116517800-116532200	Weak transcription	Fetal Lung	lung
27	chr7:116518000-116528800	Weak transcription	Primary T cells from cord blood	blood
28	chr7:116518800-116530000	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr7:116520000-116532600	Weak transcription	Brain Hippocampus Middle	brain
30	chr7:116520000-116551200	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr7:116520200-116538000	Weak transcription	Stomach Smooth Muscle	stomach
32	chr7:116520200-116541000	Weak transcription	Brain Cingulate Gyrus	brain
33	chr7:116522800-116534800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr7:116524600-116542200	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr7:116524600-116543800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr7:116525000-116529600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr7:116525000-116532400	Weak transcription	Primary hematopoietic stem cells	blood
38	chr7:116525000-116532800	Weak transcription	Fetal Muscle Trunk	muscle
39	chr7:116525200-116528800	Weak transcription	Adipose Nuclei	Adipose
40	chr7:116525200-116535000	Strong transcription	Primary B cells from peripheral blood	blood
41	chr7:116525200-116540600	Weak transcription	Fetal Muscle Leg	muscle
42	chr7:116525400-116529800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr7:116525400-116537000	Strong transcription	Fetal Thymus	thymus
44	chr7:116525800-116532600	Weak transcription	HSMMtube	muscle
45	chr7:116525800-116551200	Weak transcription	Thymus	Thymus
46	chr7:116525800-116554600	Weak transcription	Aorta	Aorta
47	chr7:116525800-116558400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr7:116525800-116559400	Weak transcription	Colonic Mucosa	Colon
49	chr7:116526000-116528800	Weak transcription	A549	lung
50	chr7:116526000-116529200	Weak transcription	HepG2	liver

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