Variant report

Variant	rs7796146
Chromosome Location	chr7:116514404-116514405
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:116510648..116515010-chr7:116515290..116517659,4	K562	blood:
2	chr7:116513576..116515376-chr7:116594668..116596519,2	K562	blood:
3	chr7:116501025..116504036-chr7:116513935..116518644,4	K562	blood:
4	chr7:116501242..116506265-chr7:116510058..116522773,18	MCF-7	breast:
5	chr7:116512190..116515433-chr7:116515804..116519859,4	MCF-7	breast:
6	chr7:116501434..116502951-chr7:116512969..116515180,2	K562	blood:
7	chr7:116512871..116514747-chr7:116571202..116574022,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC106873.4.1-3	chr7:116513508-116514841	NONHSAT122909

No data

Variant related genes	Relation type
ENSG00000198898	Chromatin interaction
ENSG00000235945	Chromatin interaction
ENSG00000214188	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1060513	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1060514	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11981133	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6952406	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6961375	0.95[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6967466	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7777997	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7780748	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7786948	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7790214	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7791219	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831107	chr7:116414734-116649466	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116503800-116554400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:116504000-116514800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr7:116504000-116515000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:116504200-116516800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr7:116504200-116516800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr7:116504200-116516800	Weak transcription	Esophagus	oesophagus
7	chr7:116504400-116514600	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr7:116504400-116515200	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr7:116504400-116528800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr7:116504400-116533000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr7:116504600-116540800	Weak transcription	Fetal Kidney	kidney
12	chr7:116505000-116516400	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr7:116505000-116517000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr7:116505000-116525200	Weak transcription	NHDF-Ad	bronchial
15	chr7:116505000-116533600	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr7:116505000-116537400	Weak transcription	Brain Germinal Matrix	brain
17	chr7:116505200-116516400	Weak transcription	Fetal Lung	lung
18	chr7:116506000-116529200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr7:116506000-116554600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr7:116507000-116516800	Weak transcription	Hela-S3	cervix
21	chr7:116507600-116528000	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr7:116508600-116514800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr7:116509000-116514600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr7:116509000-116514600	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr7:116509200-116515200	Enhancers	Primary T cells from cord blood	blood
26	chr7:116509400-116514800	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr7:116509600-116514800	Enhancers	Adipose Nuclei	Adipose
28	chr7:116509600-116515200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
29	chr7:116509600-116516600	Weak transcription	Fetal Brain Female	brain
30	chr7:116509800-116515200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
31	chr7:116510000-116516400	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr7:116510400-116516600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr7:116510600-116516200	Weak transcription	Duodenum Mucosa	Duodenum
34	chr7:116510800-116515000	Weak transcription	Lung	lung
35	chr7:116511000-116514600	Genic enhancers	K562	blood
36	chr7:116511000-116516800	Weak transcription	Brain Substantia Nigra	brain
37	chr7:116511200-116516400	Weak transcription	Brain Angular Gyrus	brain
38	chr7:116511200-116516600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr7:116511200-116528800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr7:116511400-116525400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr7:116511400-116528000	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr7:116511400-116554600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr7:116511800-116514800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr7:116512000-116516400	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr7:116512000-116516600	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr7:116512000-116516800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr7:116512000-116545400	Weak transcription	NHLF	lung
48	chr7:116512200-116515600	Weak transcription	Primary monocytes fromperipheralblood	blood
49	chr7:116512200-116516400	Weak transcription	Stomach Mucosa	stomach
50	chr7:116512200-116516600	Weak transcription	Liver	Liver

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