Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:38737792..38739807-chr7:38743748..38746475,2	K562	blood:

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1001476	0.90[CEU][hapmap];1.00[MEX][hapmap]
rs10486680	0.90[CEU][hapmap]
rs10951572	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10951573	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11970960	0.90[CEU][hapmap]
rs11978816	0.90[CEU][hapmap]
rs11980534	0.89[CEU][hapmap]
rs11982889	0.90[CEU][hapmap]
rs11984145	0.90[CEU][hapmap]
rs12112141	0.90[CEU][hapmap]
rs13231320	1.00[CEU][hapmap]
rs1557941	0.90[CEU][hapmap];1.00[MEX][hapmap]
rs16879964	0.90[CEU][hapmap]
rs16879966	0.90[CEU][hapmap]
rs17171465	0.90[CEU][hapmap]
rs17171466	0.88[CEU][hapmap]
rs34165183	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34765437	0.97[EUR][1000 genomes]
rs35450820	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35713809	0.89[EUR][1000 genomes]
rs4281030	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4316071	1.00[EUR][1000 genomes]
rs57048480	0.81[EUR][1000 genomes]
rs67594222	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6962120	0.90[CEU][hapmap]
rs6976100	0.90[CEU][hapmap]
rs713243	0.90[CEU][hapmap]
rs7812184	0.90[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887965	chr7:38706384-38793243	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11981203	VPS41	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38742800-38745000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr7:38743400-38744600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr7:38743400-38744800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr7:38743600-38744600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr7:38743600-38744600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr7:38743800-38744800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr7:38744000-38744600	Enhancers	H9 Cell Line	embryonic stem cell
8	chr7:38744000-38744600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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