Variant report

Variant	rs35713809
Chromosome Location	chr7:38747996-38747997
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10951572	0.86[EUR][1000 genomes]
rs10951573	0.89[EUR][1000 genomes]
rs11978898	0.85[EUR][1000 genomes]
rs11981203	0.89[EUR][1000 genomes]
rs11983885	0.88[EUR][1000 genomes]
rs13231320	0.85[EUR][1000 genomes]
rs34165183	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34505853	0.88[EUR][1000 genomes]
rs34765437	0.86[EUR][1000 genomes]
rs35259737	0.85[EUR][1000 genomes]
rs35360951	0.86[EUR][1000 genomes]
rs35450820	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4281030	0.89[EUR][1000 genomes]
rs4316071	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67594222	0.89[EUR][1000 genomes]
rs73119708	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887965	chr7:38706384-38793243	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35713809	VPS41	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38747800-38749000	Enhancers	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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