Variant report

Variant	rs11983885
Chromosome Location	chr7:38752305-38752306
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1001476	0.90[CEU][hapmap]
rs10486680	0.90[CEU][hapmap]
rs10951573	1.00[CEU][hapmap]
rs11970960	0.91[CEU][hapmap]
rs11978816	0.91[CEU][hapmap]
rs11978898	0.97[EUR][1000 genomes]
rs11980534	0.90[CEU][hapmap]
rs11982889	0.90[CEU][hapmap]
rs11984145	0.90[CEU][hapmap]
rs12112141	0.91[CEU][hapmap]
rs13231320	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs1557941	0.90[CEU][hapmap]
rs16879964	0.91[CEU][hapmap]
rs16879966	0.90[CEU][hapmap]
rs17171465	0.91[CEU][hapmap]
rs17171466	0.89[CEU][hapmap]
rs34165183	0.88[EUR][1000 genomes]
rs34505853	1.00[EUR][1000 genomes]
rs35259737	0.97[EUR][1000 genomes]
rs35360951	0.98[EUR][1000 genomes]
rs35450820	0.88[EUR][1000 genomes]
rs35713809	0.88[EUR][1000 genomes]
rs6962120	0.91[CEU][hapmap]
rs6976100	0.91[CEU][hapmap]
rs713243	0.90[CEU][hapmap]
rs73119708	0.96[EUR][1000 genomes]
rs7812184	0.91[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887965	chr7:38706384-38793243	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11983885	VPS41	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38748800-38756200	Weak transcription	Fetal Brain Female	brain
2	chr7:38749000-38803600	Weak transcription	Fetal Brain Male	brain
3	chr7:38751400-38753200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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