Variant report

Variant	rs11981335
Chromosome Location	chr7:101363677-101363678
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:101360494..101364353-chr7:101457066..101461812,6	MCF-7	breast:
2	chr7:101363569..101367486-chr7:101367567..101371455,4	MCF-7	breast:
3	chr7:101353778..101358971-chr7:101359540..101363864,5	MCF-7	breast:
4	chr7:101360472..101364691-chr7:101369638..101374194,4	K562	blood:
5	chr7:101360823..101364160-chr7:101364363..101367581,3	K562	blood:

Variant related genes	Relation type
ENSG00000257923	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11489510	0.91[ASN][1000 genomes]
rs11761218	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11770669	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11772063	1.00[ASN][1000 genomes]
rs11973902	0.91[ASN][1000 genomes]
rs11982641	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1880345	1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs36073671	0.95[ASN][1000 genomes]
rs55772477	0.91[ASN][1000 genomes]
rs56195308	0.95[ASN][1000 genomes]
rs56304866	0.95[ASN][1000 genomes]
rs59250433	0.95[ASN][1000 genomes]
rs62463678	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62463679	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6465827	1.00[JPT][hapmap]
rs6948393	1.00[JPT][hapmap]
rs6964718	1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6964868	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73176074	0.95[ASN][1000 genomes]
rs73177854	0.81[ASN][1000 genomes]
rs7792422	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933653	chr7:100701931-101515782	Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv1018544	chr7:101225639-101424889	Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv539045	chr7:101225639-101424889	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv482758	chr7:101231458-101395219	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv831079	chr7:101273495-101466776	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
6	nsv1021797	chr7:101342353-101466957	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
7	nsv539046	chr7:101342353-101466957	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101332000-101376800	Weak transcription	Right Atrium	heart
2	chr7:101359800-101364200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr7:101360600-101364800	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr7:101360600-101365600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr7:101360600-101365600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr7:101360600-101366600	Enhancers	Fetal Intestine Large	intestine
7	chr7:101360800-101365000	Enhancers	Fetal Thymus	thymus
8	chr7:101361800-101365400	Weak transcription	Colonic Mucosa	Colon
9	chr7:101362000-101365400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:101362200-101365200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr7:101362400-101364200	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr7:101362400-101365400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr7:101363000-101363800	Enhancers	Fetal Intestine Small	intestine
14	chr7:101363400-101364200	Enhancers	Dnd41	blood
15	chr7:101363400-101364800	Enhancers	Primary hematopoietic stem cells	blood
16	chr7:101363600-101364000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr7:101363600-101364000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
18	chr7:101363600-101364000	Enhancers	Lung	lung
19	chr7:101363600-101364000	Enhancers	Spleen	Spleen
20	chr7:101363600-101364800	Enhancers	Thymus	Thymus

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