Variant report

Variant	rs11982641
Chromosome Location	chr7:101361842-101361843
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:101360494..101364353-chr7:101457066..101461812,6	MCF-7	breast:
2	chr7:101360591..101363401-chr7:101364095..101366139,2	MCF-7	breast:
3	chr7:101358883..101362441-chr7:101383235..101387377,4	MCF-7	breast:
4	chr13:52026309..52027284-chr7:101361594..101362355,2	NB4	blood:
5	chr7:101361354..101363333-chr7:101364363..101366054,2	K562	blood:
6	chr7:101358313..101363414-chr7:101457300..101460458,5	MCF-7	breast:
7	chr7:101353778..101358971-chr7:101359540..101363864,5	MCF-7	breast:
8	chr7:101360484..101362871-chr7:101366884..101369233,2	MCF-7	breast:
9	chr7:101359528..101362739-chr7:101371224..101372891,4	MCF-7	breast:
10	chr7:101360472..101364691-chr7:101369638..101374194,4	K562	blood:
11	chr7:101360823..101364160-chr7:101364363..101367581,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000236778	Chromatin interaction
ENSG00000257923	Chromatin interaction
ENSG00000102786	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11489510	0.83[ASN][1000 genomes]
rs11761218	0.87[ASN][1000 genomes]
rs11770669	0.87[ASN][1000 genomes]
rs11772063	0.91[ASN][1000 genomes]
rs11973902	0.83[ASN][1000 genomes]
rs11981335	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1880345	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs36073671	0.87[ASN][1000 genomes]
rs55772477	0.83[ASN][1000 genomes]
rs56195308	0.87[ASN][1000 genomes]
rs56304866	0.87[ASN][1000 genomes]
rs59250433	0.87[ASN][1000 genomes]
rs62463678	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62463679	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6964718	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6964868	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73176074	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933653	chr7:100701931-101515782	Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv1018544	chr7:101225639-101424889	Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv539045	chr7:101225639-101424889	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv482758	chr7:101231458-101395219	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv831079	chr7:101273495-101466776	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
6	nsv1021797	chr7:101342353-101466957	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
7	nsv539046	chr7:101342353-101466957	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101332000-101376800	Weak transcription	Right Atrium	heart
2	chr7:101359800-101364200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr7:101360200-101362200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
4	chr7:101360400-101362400	Enhancers	Placenta	Placenta
5	chr7:101360400-101362600	Enhancers	Fetal Intestine Small	intestine
6	chr7:101360600-101362000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr7:101360600-101362200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr7:101360600-101364800	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr7:101360600-101365600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr7:101360600-101365600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr7:101360600-101366600	Enhancers	Fetal Intestine Large	intestine
12	chr7:101360800-101362000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr7:101360800-101362000	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr7:101360800-101362000	Enhancers	Muscle Satellite Cultured Cells	--
15	chr7:101360800-101362400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr7:101360800-101362400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr7:101360800-101362600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
18	chr7:101360800-101365000	Enhancers	Fetal Thymus	thymus
19	chr7:101361000-101362000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr7:101361000-101362000	Enhancers	Fetal Stomach	stomach
21	chr7:101361000-101362200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr7:101361000-101362200	Enhancers	NH-A	brain
23	chr7:101361200-101362000	Bivalent Enhancer	Fetal Muscle Leg	muscle
24	chr7:101361200-101362000	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr7:101361200-101363600	Weak transcription	Spleen	Spleen
26	chr7:101361400-101362400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr7:101361400-101362400	Enhancers	Stomach Smooth Muscle	stomach
28	chr7:101361400-101362800	Flanking Bivalent TSS/Enh	HepG2	liver
29	chr7:101361600-101362000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr7:101361600-101362000	Flanking Active TSS	HSMM	muscle
31	chr7:101361600-101362200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr7:101361600-101362200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
33	chr7:101361600-101362400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr7:101361600-101362400	Enhancers	Hela-S3	cervix
35	chr7:101361800-101362000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
36	chr7:101361800-101362000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr7:101361800-101362200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr7:101361800-101362200	Weak transcription	Primary hematopoietic stem cells	blood
39	chr7:101361800-101362200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr7:101361800-101362200	Enhancers	Osteobl	bone
41	chr7:101361800-101365400	Weak transcription	Colonic Mucosa	Colon

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