Variant report

Variant	rs11982036
Chromosome Location	chr7:121379681-121379682
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10244523	1.00[AMR][1000 genomes]
rs73431198	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431200	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032054	chr7:120926379-121432971	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv539103	chr7:120926379-121432971	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv3398897	chr7:121379666-121381964	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121376600-121381400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr7:121377000-121381200	Weak transcription	NHEK	skin
3	chr7:121379200-121379800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr7:121379200-121379800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr7:121379200-121380000	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr7:121379200-121380000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr7:121379200-121380000	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr7:121379400-121379800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr7:121379400-121379800	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr7:121379400-121379800	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr7:121379400-121380000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:121379600-121379800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr7:121379600-121380000	Enhancers	H1 Cell Line	embryonic stem cell
14	chr7:121379600-121382000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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