Variant report

Variant	rs73431200
Chromosome Location	chr7:121382800-121382801
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10244523	1.00[AMR][1000 genomes]
rs11982036	1.00[AMR][1000 genomes]
rs73431198	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032054	chr7:120926379-121432971	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv539103	chr7:120926379-121432971	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121380000-121390800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:121381000-121383600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:121381200-121383400	Enhancers	NHEK	skin
4	chr7:121381200-121386200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr7:121381400-121383600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr7:121381400-121386400	Enhancers	HMEC	breast
7	chr7:121382200-121382800	Enhancers	Stomach Mucosa	stomach
8	chr7:121382400-121385200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr7:121382800-121383200	Enhancers	Esophagus	oesophagus
10	chr7:121382800-121383200	Weak transcription	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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