Variant report

Variant	rs11982125
Chromosome Location	chr7:39759051-39759052
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000006451	Chromatin interaction
ENSG00000188185	Chromatin interaction
ENSG00000241127	Chromatin interaction
ENSG00000227172	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11973533	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs11976444	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11979241	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs11981716	0.88[AFR][1000 genomes]
rs11982740	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs57770125	0.93[AFR][1000 genomes]
rs59463295	0.88[AFR][1000 genomes]
rs59642583	1.00[AMR][1000 genomes]
rs59829073	0.88[AFR][1000 genomes]
rs59987676	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61239015	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508451	chr7:39660784-39787222	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv427777	chr7:39726513-39936904	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39755600-39760000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr7:39756600-39759800	Weak transcription	K562	blood
3	chr7:39758600-39761000	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr7:39758600-39761200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr7:39758600-39761400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr7:39758800-39759400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr7:39758800-39760800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr7:39759000-39760000	Enhancers	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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