Variant report

Variant	rs59829073
Chromosome Location	chr7:39680090-39680091
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:39661536..39664471-chr7:39679572..39681314,3	MCF-7	breast:
2	chr7:39677650..39680177-chr7:39682752..39684306,2	K562	blood:
3	chr7:39678677..39680860-chr7:39681239..39684252,3	K562	blood:
4	chr7:39678848..39680622-chr7:39760404..39763010,2	K562	blood:
5	chr7:39670051..39674974-chr7:39675213..39680609,7	K562	blood:

Variant related genes	Relation type
ENSG00000006451	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11973533	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11973777	1.00[AMR][1000 genomes]
rs11976079	1.00[AMR][1000 genomes]
rs11976400	1.00[AMR][1000 genomes]
rs11976444	0.92[AFR][1000 genomes]
rs11979241	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11981716	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11982125	0.88[AFR][1000 genomes]
rs11982738	1.00[AMR][1000 genomes]
rs11982740	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57551664	1.00[AMR][1000 genomes]
rs57770125	0.82[AFR][1000 genomes]
rs59463295	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59987676	0.92[AFR][1000 genomes]
rs61239015	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73385786	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887970	chr7:39587912-39688152	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv508451	chr7:39660784-39787222	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv887971	chr7:39662268-39745775	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv887972	chr7:39666267-39733688	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39665600-39680400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:39665600-39682200	Weak transcription	Liver	Liver
3	chr7:39666200-39681800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr7:39666200-39694400	Weak transcription	Fetal Brain Female	brain
5	chr7:39666800-39681200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr7:39667200-39698800	Weak transcription	Fetal Kidney	kidney
7	chr7:39668200-39681000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr7:39668200-39681000	Weak transcription	Fetal Heart	heart
9	chr7:39668600-39680600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr7:39669600-39681200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr7:39671800-39693800	Weak transcription	A549	lung
12	chr7:39672200-39681600	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr7:39672200-39681800	Weak transcription	Gastric	stomach
14	chr7:39672200-39681800	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr7:39672200-39684000	Weak transcription	NHLF	lung
16	chr7:39672200-39722800	Weak transcription	Hela-S3	cervix
17	chr7:39672400-39683200	Weak transcription	Pancreas	Pancrea
18	chr7:39672800-39680400	Weak transcription	K562	blood
19	chr7:39672800-39681800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr7:39674000-39681600	Weak transcription	Fetal Lung	lung
21	chr7:39674000-39690200	Weak transcription	NH-A	brain
22	chr7:39674000-39690800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr7:39674200-39680400	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr7:39674200-39680600	Weak transcription	HSMM	muscle
25	chr7:39674200-39681600	Weak transcription	Fetal Intestine Large	intestine
26	chr7:39674200-39683200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr7:39674200-39683800	Weak transcription	Spleen	Spleen
28	chr7:39674200-39690000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr7:39674200-39691400	Weak transcription	Rectal Smooth Muscle	rectum
30	chr7:39674200-39696000	Weak transcription	Thymus	Thymus
31	chr7:39674400-39683800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr7:39674400-39685400	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr7:39674800-39682400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
34	chr7:39675200-39682800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr7:39675200-39683800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr7:39675200-39708800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr7:39675600-39688200	Weak transcription	Fetal Stomach	stomach
38	chr7:39675600-39701400	Weak transcription	Fetal Muscle Trunk	muscle
39	chr7:39675800-39691600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr7:39676000-39682600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr7:39676600-39680600	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr7:39676600-39681800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr7:39676600-39683400	Weak transcription	Osteobl	bone
44	chr7:39676600-39683600	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr7:39676600-39690200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr7:39676600-39694400	Weak transcription	Primary monocytes fromperipheralblood	blood
47	chr7:39676600-39694400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr7:39676600-39694400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr7:39676800-39681000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr7:39676800-39685200	Weak transcription	HepG2	liver

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