Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10247561	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10270395	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11762830	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11768982	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1860800	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2390082	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2390083	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2390084	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2390085	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2390086	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3885128	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4431496	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4721755	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62447426	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6461414	0.87[AMR][1000 genomes]
rs6944896	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6944969	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6963075	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7777583	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7796931	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7802269	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7803658	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022118	chr7:19178075-19518160	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv887819	chr7:19262091-19658389	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1018601	chr7:19272360-20008881	Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
4	nsv1021194	chr7:19290916-19521199	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1021479	chr7:19363947-19485519	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19357600-19366600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr7:19362200-19366800	Weak transcription	Osteobl	bone
3	chr7:19365800-19368000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr7:19366400-19367000	Enhancers	HUVEC	blood vessel

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