Variant report

Variant	rs11982715
Chromosome Location	chr7:50910670-50910671
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10233389	0.90[AFR][1000 genomes]
rs11762951	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11769251	0.84[AMR][1000 genomes]
rs11976942	0.84[AMR][1000 genomes]
rs11979920	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11980879	0.84[AMR][1000 genomes]
rs12531949	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17134068	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17151260	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55988746	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56046626	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59368174	0.84[AMR][1000 genomes]
rs62447624	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62447625	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6979571	0.84[AMR][1000 genomes]
rs73342645	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7800996	0.84[AMR][1000 genomes]
rs7806327	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs990829	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016665	chr7:50452552-51404524	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv606907	chr7:50899168-51195380	Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50907200-50916800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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