Variant report
| Variant | rs11762951 |
|---|---|
| Chromosome Location | chr7:50914486-50914487 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs11238371 | 0.94[AMR][1000 genomes] |
| rs11768798 | 0.84[EUR][1000 genomes] |
| rs11769251 | 1.00[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs11976942 | 1.00[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs11979920 | 1.00[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs11980879 | 1.00[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs11982715 | 0.84[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs12531949 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12537817 | 0.89[AMR][1000 genomes] |
| rs17134068 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17151260 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55958753 | 0.83[AMR][1000 genomes] |
| rs55988746 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56025941 | 0.83[AMR][1000 genomes] |
| rs56046626 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59368174 | 1.00[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs61445038 | 0.80[AMR][1000 genomes] |
| rs62447624 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62447625 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62449460 | 0.84[EUR][1000 genomes] |
| rs6979571 | 1.00[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs73342645 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7800996 | 1.00[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs7806327 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs990829 | 0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1016665 | chr7:50452552-51404524 | Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| 2 | nsv606907 | chr7:50899168-51195380 | Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:50907200-50916800 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
| 2 | chr7:50911400-50925600 | Weak transcription | Pancreas | Pancrea |
