Variant report

Variant	rs11768798
Chromosome Location	chr7:50926655-50926656
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:50920418..50922881-chr7:50925446..50926981,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10486746	0.84[EUR][1000 genomes]
rs11238371	0.94[EUR][1000 genomes]
rs11238391	0.84[EUR][1000 genomes]
rs11762951	0.84[EUR][1000 genomes]
rs11768836	0.94[EUR][1000 genomes]
rs11769141	0.84[EUR][1000 genomes]
rs11769251	1.00[EUR][1000 genomes]
rs11971137	0.94[EUR][1000 genomes]
rs11975831	0.94[EUR][1000 genomes]
rs11976892	0.94[EUR][1000 genomes]
rs11976942	1.00[EUR][1000 genomes]
rs11978416	0.84[EUR][1000 genomes]
rs11979920	0.94[EUR][1000 genomes]
rs11980879	1.00[EUR][1000 genomes]
rs11981285	0.94[EUR][1000 genomes]
rs12531949	0.84[EUR][1000 genomes]
rs12533689	0.84[EUR][1000 genomes]
rs12537817	0.94[EUR][1000 genomes]
rs17134068	0.84[EUR][1000 genomes]
rs17151260	0.84[EUR][1000 genomes]
rs2023959	0.84[EUR][1000 genomes]
rs34867714	0.94[EUR][1000 genomes]
rs55958753	0.94[EUR][1000 genomes]
rs55988746	0.84[EUR][1000 genomes]
rs56025941	0.94[EUR][1000 genomes]
rs56046626	0.84[EUR][1000 genomes]
rs57377275	0.94[EUR][1000 genomes]
rs57780834	0.94[EUR][1000 genomes]
rs59368174	1.00[EUR][1000 genomes]
rs61445038	0.94[EUR][1000 genomes]
rs62447624	0.84[EUR][1000 genomes]
rs62447625	0.84[EUR][1000 genomes]
rs62449460	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62449466	0.94[EUR][1000 genomes]
rs62449503	0.84[EUR][1000 genomes]
rs62449506	0.81[EUR][1000 genomes]
rs62449507	0.81[EUR][1000 genomes]
rs62449531	0.94[EUR][1000 genomes]
rs62449535	0.94[EUR][1000 genomes]
rs62449536	0.89[EUR][1000 genomes]
rs62449537	0.94[EUR][1000 genomes]
rs62449538	0.94[EUR][1000 genomes]
rs6977927	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs6979571	1.00[EUR][1000 genomes]
rs73342645	0.84[EUR][1000 genomes]
rs73342688	0.94[EUR][1000 genomes]
rs73344412	0.94[EUR][1000 genomes]
rs73344443	0.84[EUR][1000 genomes]
rs7800996	1.00[EUR][1000 genomes]
rs7806327	0.89[EUR][1000 genomes]
rs990829	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016665	chr7:50452552-51404524	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv606907	chr7:50899168-51195380	Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50925600-50927000	Enhancers	Pancreas	Pancrea
2	chr7:50926200-50934600	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr7:50926200-50935600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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