Variant report

Variant	rs62449535
Chromosome Location	chr7:51049461-51049462
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:50861965..50863121-chr7:51049318..51050307,3	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11238371	0.88[EUR][1000 genomes]
rs11768798	0.94[EUR][1000 genomes]
rs11768836	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11769251	0.94[EUR][1000 genomes]
rs11971137	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11975831	1.00[EUR][1000 genomes]
rs11976892	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11976942	0.94[EUR][1000 genomes]
rs11979920	0.88[EUR][1000 genomes]
rs11980879	0.94[EUR][1000 genomes]
rs11981285	0.88[EUR][1000 genomes]
rs12537817	0.88[EUR][1000 genomes]
rs34867714	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55958753	0.88[EUR][1000 genomes]
rs56025941	0.88[EUR][1000 genomes]
rs57377275	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57780834	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59368174	0.94[EUR][1000 genomes]
rs61445038	0.88[EUR][1000 genomes]
rs62449460	0.94[EUR][1000 genomes]
rs62449466	0.88[EUR][1000 genomes]
rs62449531	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62449536	0.94[EUR][1000 genomes]
rs62449537	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62449538	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6969400	0.82[EUR][1000 genomes]
rs6977927	0.88[EUR][1000 genomes]
rs6979571	0.94[EUR][1000 genomes]
rs73342688	0.88[EUR][1000 genomes]
rs73344412	0.88[EUR][1000 genomes]
rs7800996	0.94[EUR][1000 genomes]
rs7806327	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016665	chr7:50452552-51404524	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv606907	chr7:50899168-51195380	Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2761146	chr7:50975457-51957019	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv1027122	chr7:50984824-51376078	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv538836	chr7:50984824-51376078	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv830999	chr7:51020735-51164809	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:51038000-51049600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:51042600-51050000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:51049400-51050200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr7:51049400-51050200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr7:51049400-51052200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr7:51049400-51052600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr7:51049400-51052800	Enhancers	H1 Cell Line	embryonic stem cell

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