Variant report

Variant	rs11768836
Chromosome Location	chr7:51030134-51030135
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:51028938..51031506-chr7:51033680..51035202,2	MCF-7	breast:
2	chr7:51020833..51022713-chr7:51029451..51032212,2	MCF-7	breast:
3	chr7:51025823..51027586-chr7:51027677..51030856,3	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11238371	0.88[EUR][1000 genomes]
rs11768798	0.94[EUR][1000 genomes]
rs11769251	0.94[EUR][1000 genomes]
rs11971137	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11975831	1.00[EUR][1000 genomes]
rs11976892	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11976942	0.94[EUR][1000 genomes]
rs11979920	0.88[EUR][1000 genomes]
rs11980879	0.94[EUR][1000 genomes]
rs11981285	0.88[EUR][1000 genomes]
rs12537817	0.88[EUR][1000 genomes]
rs34867714	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55958753	0.88[EUR][1000 genomes]
rs56025941	0.88[EUR][1000 genomes]
rs57377275	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57780834	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59368174	0.94[EUR][1000 genomes]
rs61445038	0.88[EUR][1000 genomes]
rs62449460	0.94[EUR][1000 genomes]
rs62449466	0.88[EUR][1000 genomes]
rs62449531	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62449535	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62449536	0.94[EUR][1000 genomes]
rs62449537	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62449538	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6969400	0.82[EUR][1000 genomes]
rs6977927	0.88[EUR][1000 genomes]
rs6979571	0.94[EUR][1000 genomes]
rs73342688	0.88[EUR][1000 genomes]
rs73344412	0.88[EUR][1000 genomes]
rs7800996	0.94[EUR][1000 genomes]
rs7806327	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016665	chr7:50452552-51404524	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv606907	chr7:50899168-51195380	Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv888022	chr7:50933678-51046674	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv508453	chr7:50963780-51030439	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv2761146	chr7:50975457-51957019	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	nsv1027122	chr7:50984824-51376078	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv538836	chr7:50984824-51376078	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv830999	chr7:51020735-51164809	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:51021000-51030600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:51024000-51030600	Weak transcription	Gastric	stomach
3	chr7:51025800-51031400	Enhancers	HSMMtube	muscle
4	chr7:51026000-51030200	Weak transcription	HepG2	liver
5	chr7:51028600-51031400	Enhancers	Pancreas	Pancrea
6	chr7:51029000-51031400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr7:51029200-51031000	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr7:51029200-51031800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr7:51029400-51031400	Enhancers	Right Ventricle	heart
10	chr7:51029600-51031200	Enhancers	Right Atrium	heart
11	chr7:51029800-51030200	Enhancers	Hela-S3	cervix
12	chr7:51029800-51030400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr7:51029800-51031400	Enhancers	Lung	lung
14	chr7:51029800-51031800	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr7:51030000-51030200	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr7:51030000-51030200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr7:51030000-51030200	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr7:51030000-51030400	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr7:51030000-51030400	Enhancers	Duodenum Mucosa	Duodenum
20	chr7:51030000-51030400	Enhancers	K562	blood
21	chr7:51030000-51030800	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr7:51030000-51030800	Enhancers	Small Intestine	intestine
23	chr7:51030000-51031000	Enhancers	Primary hematopoietic stem cells	blood
24	chr7:51030000-51031000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr7:51030000-51031000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr7:51030000-51031000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr7:51030000-51031000	Enhancers	Adipose Nuclei	Adipose
28	chr7:51030000-51031000	Enhancers	Fetal Muscle Leg	muscle
29	chr7:51030000-51031000	Enhancers	HSMM	muscle
30	chr7:51030000-51031200	Enhancers	Stomach Mucosa	stomach
31	chr7:51030000-51031200	Enhancers	Spleen	Spleen
32	chr7:51030000-51031200	Flanking Active TSS	A549	lung
33	chr7:51030000-51031200	Enhancers	NH-A	brain
34	chr7:51030000-51031200	Enhancers	Osteobl	bone
35	chr7:51030000-51031400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr7:51030000-51031400	Enhancers	Primary monocytes fromperipheralblood	blood
37	chr7:51030000-51031400	Enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr7:51030000-51031400	Enhancers	Colon Smooth Muscle	Colon
39	chr7:51030000-51031400	Enhancers	Esophagus	oesophagus
40	chr7:51030000-51031400	Enhancers	Left Ventricle	heart
41	chr7:51030000-51031400	Enhancers	Sigmoid Colon	Sigmoid Colon
42	chr7:51030000-51031400	Enhancers	NHDF-Ad	bronchial
43	chr7:51030000-51031600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr7:51030000-51031600	Enhancers	HUVEC	blood vessel
45	chr7:51030000-51031800	Enhancers	Rectal Mucosa Donor 31	rectum

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