Variant report

Variant	rs1198332
Chromosome Location	chr13:50393884-50393885
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1198326	0.84[ASN][1000 genomes]
rs1198331	0.84[ASN][1000 genomes]
rs1923661	0.86[ASN][1000 genomes]
rs3903769	0.84[ASN][1000 genomes]
rs6561564	0.86[ASN][1000 genomes]
rs716371	0.84[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs1198332	EBPL	cis	Skin Sun Exposed Lower leg	GTEx
rs1198332	EBPL	cis	Artery Tibial	GTEx
rs1198332	EBPL	cis	Thyroid	GTEx
rs1198332	EBPL	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50387400-50394600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr13:50387400-50394800	Weak transcription	Fetal Intestine Large	intestine
3	chr13:50390000-50394800	Weak transcription	Placenta	Placenta
4	chr13:50390400-50394000	Weak transcription	HepG2	liver
5	chr13:50393200-50394800	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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