Variant report

Variant	rs6561564
Chromosome Location	chr13:50393531-50393532
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:50365656..50370137-chr13:50393100..50397316,5	K562	blood:

Variant related genes	Relation type
ENSG00000102753	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1009334	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11616903	1.00[JPT][hapmap]
rs1198314	1.00[EUR][1000 genomes]
rs1198316	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs1198318	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1198326	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1198330	0.88[ASN][1000 genomes]
rs1198331	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1198332	0.86[ASN][1000 genomes]
rs1923661	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1967761	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2025225	1.00[JPT][hapmap]
rs2407701	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2897769	0.87[EUR][1000 genomes]
rs3903769	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs716371	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7320463	1.00[JPT][hapmap]
rs7321520	1.00[JPT][hapmap]
rs7994774	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8000298	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8000321	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9526608	1.00[JPT][hapmap]
rs9535372	1.00[JPT][hapmap]
rs9562920	1.00[CHB][hapmap];0.95[EUR][1000 genomes]
rs9562923	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes]
rs9562924	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes]
rs9562930	0.92[ASN][1000 genomes]
rs9568315	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes]
rs9568319	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes]
rs9568320	0.95[EUR][1000 genomes]
rs9568327	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes]
rs9568328	1.00[CHB][hapmap];0.95[EUR][1000 genomes]
rs9568331	0.95[EUR][1000 genomes]
rs9568332	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs957475	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.95[EUR][1000 genomes]
rs9591301	0.95[EUR][1000 genomes]
rs9596178	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes]
rs9596179	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes]
rs9596190	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs6561564	EBPL	cis	Skin Sun Exposed Lower leg	GTEx
rs6561564	EBPL	cis	Artery Tibial	GTEx
rs6561564	EBPL	cis	Thyroid	GTEx
rs6561564	EBPL	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50387400-50394600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr13:50387400-50394800	Weak transcription	Fetal Intestine Large	intestine
3	chr13:50390000-50394800	Weak transcription	Placenta	Placenta
4	chr13:50390400-50394000	Weak transcription	HepG2	liver
5	chr13:50393200-50394800	Weak transcription	Fetal Heart	heart

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